Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a05
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0488 - 4070506-4072277,4072455-4072557                           30   2.0  
12_02_1219 + 27096477-27096590,27096704-27097078                       29   6.2  
05_06_0194 + 26287854-26288233,26289810-26290044                       28   8.3  
03_05_0630 + 26260159-26260272,26260520-26260894                       28   8.3  
01_06_0525 - 30014497-30014731,30015509-30015573                       28   8.3  

>05_01_0488 - 4070506-4072277,4072455-4072557
          Length = 624

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +1

Query: 397 ECRPIEDVRGELSIIIFEGYDGSLSWSTADRILDL*LEEYSTDFFYIINIKIIVL 561
           +C  +    G  S +  +G DGS S S +D  LD   EE     FY ++ KII L
Sbjct: 131 DCFDVSIGSGMSSDVSKKGSDGSSSSSESDLELDEAKEENGNSIFYALSQKIIEL 185


>12_02_1219 + 27096477-27096590,27096704-27097078
          Length = 162

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 314 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 415
           GF +FS    + D  +  NG   DGR IT N AQSR
Sbjct: 52  GFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSR 87


>05_06_0194 + 26287854-26288233,26289810-26290044
          Length = 204

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 175 IYGCTNIVYVFVYKKSCYPTAEVIFF 98
           + GC  IV V +Y   C PTAE + +
Sbjct: 158 VRGCDRIVPVDIYVPGCPPTAEALLY 183


>03_05_0630 + 26260159-26260272,26260520-26260894
          Length = 162

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 314 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 415
           GF +FS    + D  +  NG   DGR IT N AQSR
Sbjct: 52  GFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSR 87


>01_06_0525 - 30014497-30014731,30015509-30015573
          Length = 99

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 175 IYGCTNIVYVFVYKKSCYPTAEVIFF 98
           + GC  IV V +Y   C PTAE + +
Sbjct: 53  VRGCDRIVPVDIYVPGCPPTAEALLY 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,174,511
Number of Sequences: 37544
Number of extensions: 380744
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)