Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a05
         (856 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160923-1|AAD46863.1|  190|Drosophila melanogaster BcDNA.LD1045...    76   7e-14
AE014296-2644|AAF49532.2|  190|Drosophila melanogaster CG5474-PA...    76   7e-14
AY095062-1|AAM11390.1|  512|Drosophila melanogaster RE01809p pro...    30   4.7  
AE014134-207|AAF51413.1|  512|Drosophila melanogaster CG4726-PA ...    30   4.7  

>AF160923-1|AAD46863.1|  190|Drosophila melanogaster BcDNA.LD10457
           protein.
          Length = 190

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 31/50 (62%), Positives = 39/50 (78%)
 Frame = -2

Query: 498 VQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 349
           +Q ++SS PGEG IV   +Y+++FSSH  DW AFAVMTLPSLAIP  LW+
Sbjct: 126 LQLAVSSEPGEGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLAIPLALWH 175


>AE014296-2644|AAF49532.2|  190|Drosophila melanogaster CG5474-PA
           protein.
          Length = 190

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 31/50 (62%), Positives = 39/50 (78%)
 Frame = -2

Query: 498 VQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 349
           +Q ++SS PGEG IV   +Y+++FSSH  DW AFAVMTLPSLAIP  LW+
Sbjct: 126 LQLAVSSEPGEGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLAIPLALWH 175


>AY095062-1|AAM11390.1|  512|Drosophila melanogaster RE01809p
           protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 258 QHRPN*LHYNKNLTSVPFWVLKASHICS 341
           +H P  + + K  TSVPFW +  +H CS
Sbjct: 276 EHHPA-VPWGKVFTSVPFWAILIAHTCS 302


>AE014134-207|AAF51413.1|  512|Drosophila melanogaster CG4726-PA
           protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 258 QHRPN*LHYNKNLTSVPFWVLKASHICS 341
           +H P  + + K  TSVPFW +  +H CS
Sbjct: 276 EHHPA-VPWGKVFTSVPFWAILIAHTCS 302


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,443,449
Number of Sequences: 53049
Number of extensions: 695252
Number of successful extensions: 1244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)