Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a04
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su... 99 4e-22
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 28 1.4
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 4.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 5.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 5.6
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 7.4
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 7.4
>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 270
Score = 99 bits (238), Expect = 4e-22
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Frame = -2
Query: 737 CGELLNKIKIALT-QLTFLPSNNVAANQKELILARDVLEIGAQWAVAVKDVKAFERYMSQ 561
C + L K+K+ L Q F+P+++ +++ AR+V E G ++ D+++F RY SQ
Sbjct: 21 CKKELLKLKVELAKQNLFVPTSD----KEKASFARNVFEYGVLVSIQTCDIESFARYASQ 76
Query: 560 LKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLP-VDVIRTDLYIRHP 384
+ +Y D L S+ LS+NR+AEFHT LE +P + D Y+
Sbjct: 77 VIPFYHD---SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWV 133
Query: 383 LALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTIPCAEAAR 204
++LEQ +MEG+++K+ + +++FM ++ VR EIA C EK Y IP + A
Sbjct: 134 ISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATS 193
Query: 203 RLNLSSQQAVLEYGKKRNW 147
L L + + + ++R W
Sbjct: 194 LLYLENTKETEKLAEERGW 212
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = -2
Query: 455 AEFHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLE 276
AEF+ +L L V+ ++ LY ++PL + S ++ G V DT +
Sbjct: 97 AEFNPDLALLSVNTVQKTLYDKNPLTRSTAIRVMSSIRVPAINGIVLLAIQQCITDT-AD 155
Query: 275 TVRGEIAACIEKAYHTIP 222
VR A I K Y P
Sbjct: 156 RVRQSAALAITKCYSLDP 173
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 292 WIHF*KQFVERLQLALRKLTTQSLVPKPLDDLTCLLNKQYL 170
W+++ QF+E L+ A L T L P + L YL
Sbjct: 324 WMYYLWQFLENLRFATPLLVTAQLTPVGISGCAAALTTGYL 364
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 713 KIALTQLTFLPSNNVAANQKELILARDVLEIGAQWAVAVKDVKAFERYMSQLKCYYFDYK 534
K +L + +N V+ E I+A I A + +++KD + +S + CY D
Sbjct: 510 KTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDAS 569
Query: 533 DHL 525
H+
Sbjct: 570 THI 572
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 815 ATVKDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTF 687
A +K V + NL+ W P K+ +C ++ +++ +T+L F
Sbjct: 373 AIMKRVYFRHFNLRERWLHAPEKIKRCSFPIHGVRL-ITKLQF 414
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = -2
Query: 809 VKDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIALT 699
+ VA+ +K +W P K + C ++K + L+
Sbjct: 1125 LSSVASRINQIKCDWVTDPEKFESCTSEISKFRTLLS 1161
>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 419 QLEDAQVLCETRPLGFEKAGIIDSILTVGL 508
+LEDA + + +G E+ GII ++T GL
Sbjct: 21 ELEDALNANQEKKIGLEQMGIIVQLVTEGL 50
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 12 LYNHLKMSGILNG-LLSQFSRWKNAREG 92
LYNH K +G++ G +SQF + R G
Sbjct: 219 LYNHFKQAGVVKGTAVSQFLDQRGFRYG 246
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 647 STLFGLL-RHYYLEETLTV*EQSLFCLRALHICPAFLASLPTRSS 778
S +FG + ++YY+ E E S+F L HI P L + RSS
Sbjct: 381 SYVFGCIPKNYYMTEVSPQAEDSIFKLMVDHILPEVLVN-ENRSS 424
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,169
Number of Sequences: 5004
Number of extensions: 67726
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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