Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a04
(816 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38047-1|BAA07237.1| 257|Homo sapiens 26S proteasome subunit p3... 319 7e-87
BC065006-1|AAH65006.2| 257|Homo sapiens proteasome (prosome, ma... 319 7e-87
BC001164-1|AAH01164.3| 257|Homo sapiens proteasome (prosome, ma... 319 7e-87
AC005789-1|AAC62833.1| 257|Homo sapiens PP31_HUMAN protein. 319 7e-87
BT019688-1|AAV38494.1| 257|Homo sapiens proteasome (prosome, ma... 314 2e-85
X65293-1|CAA46388.1| 737|Homo sapiens protein kinase C epsilon... 32 2.9
BC109034-1|AAI09035.1| 737|Homo sapiens protein kinase C, epsil... 32 2.9
BC109033-1|AAI09034.1| 737|Homo sapiens protein kinase C, epsil... 32 2.9
AC017006-1|AAX93253.1| 258|Homo sapiens unknown protein. 32 2.9
CR456377-1|CAG30263.1| 615|Homo sapiens Em:AP000557.1 protein. 31 5.0
BC094787-1|AAH94787.1| 615|Homo sapiens HIC2 protein protein. 31 5.0
BC032477-1|AAH32477.1| 294|Homo sapiens TMC4 protein protein. 31 5.0
BC025323-1|AAH25323.1| 706|Homo sapiens transmembrane channel-l... 31 5.0
AY236492-1|AAP69870.1| 712|Homo sapiens transmembrane channel-l... 31 5.0
AL162003-1|CAB82344.1| 315|Homo sapiens hypothetical protein pr... 31 5.0
AF349035-1|AAK72951.1| 597|Homo sapiens HIC-3 protein. 31 5.0
AB028943-1|BAA82972.2| 638|Homo sapiens KIAA1020 protein protein. 31 5.0
AY263166-1|AAP78781.1| 706|Homo sapiens TMC4 protein protein. 30 8.7
>D38047-1|BAA07237.1| 257|Homo sapiens 26S proteasome subunit p31
protein.
Length = 257
Score = 319 bits (784), Expect = 7e-87
Identities = 150/259 (57%), Positives = 191/259 (73%)
Frame = -2
Query: 791 LYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILARDVLEIGAQ 612
+Y+ LK EW +K L KCGE L ++K+ L +L FLP+ +++LILARD+LEIGAQ
Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 60
Query: 611 WAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELE 432
W++ KD+ +FERYM+QLKCYYFDYK+ LPESA+ +Q LSQNRVAEFHTELE
Sbjct: 61 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 120
Query: 431 RLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAA 252
RLP I+T++YI+HP++LEQYLMEGSYNK+FLAKGN+PAESYTFF+D LL+T+R EIA
Sbjct: 121 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 180
Query: 251 CIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILP 72
CIEKAY I EA R L ++ + + +Y KKR W LGP+N Y F S++ +P
Sbjct: 181 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIP 238
Query: 71 SAELAQQTIEYARHLEMIV 15
S ELA+Q IEYAR LEMIV
Sbjct: 239 STELAKQVIEYARQLEMIV 257
>BC065006-1|AAH65006.2| 257|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 8 protein.
Length = 257
Score = 319 bits (784), Expect = 7e-87
Identities = 150/259 (57%), Positives = 191/259 (73%)
Frame = -2
Query: 791 LYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILARDVLEIGAQ 612
+Y+ LK EW +K L KCGE L ++K+ L +L FLP+ +++LILARD+LEIGAQ
Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 60
Query: 611 WAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELE 432
W++ KD+ +FERYM+QLKCYYFDYK+ LPESA+ +Q LSQNRVAEFHTELE
Sbjct: 61 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 120
Query: 431 RLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAA 252
RLP I+T++YI+HP++LEQYLMEGSYNK+FLAKGN+PAESYTFF+D LL+T+R EIA
Sbjct: 121 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 180
Query: 251 CIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILP 72
CIEKAY I EA R L ++ + + +Y KKR W LGP+N Y F S++ +P
Sbjct: 181 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIP 238
Query: 71 SAELAQQTIEYARHLEMIV 15
S ELA+Q IEYAR LEMIV
Sbjct: 239 STELAKQVIEYARQLEMIV 257
>BC001164-1|AAH01164.3| 257|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 8 protein.
Length = 257
Score = 319 bits (784), Expect = 7e-87
Identities = 150/259 (57%), Positives = 191/259 (73%)
Frame = -2
Query: 791 LYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILARDVLEIGAQ 612
+Y+ LK EW +K L KCGE L ++K+ L +L FLP+ +++LILARD+LEIGAQ
Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 60
Query: 611 WAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELE 432
W++ KD+ +FERYM+QLKCYYFDYK+ LPESA+ +Q LSQNRVAEFHTELE
Sbjct: 61 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 120
Query: 431 RLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAA 252
RLP I+T++YI+HP++LEQYLMEGSYNK+FLAKGN+PAESYTFF+D LL+T+R EIA
Sbjct: 121 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 180
Query: 251 CIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILP 72
CIEKAY I EA R L ++ + + +Y KKR W LGP+N Y F S++ +P
Sbjct: 181 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIP 238
Query: 71 SAELAQQTIEYARHLEMIV 15
S ELA+Q IEYAR LEMIV
Sbjct: 239 STELAKQVIEYARQLEMIV 257
>AC005789-1|AAC62833.1| 257|Homo sapiens PP31_HUMAN protein.
Length = 257
Score = 319 bits (784), Expect = 7e-87
Identities = 150/259 (57%), Positives = 191/259 (73%)
Frame = -2
Query: 791 LYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILARDVLEIGAQ 612
+Y+ LK EW +K L KCGE L ++K+ L +L FLP+ +++LILARD+LEIGAQ
Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 60
Query: 611 WAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELE 432
W++ KD+ +FERYM+QLKCYYFDYK+ LPESA+ +Q LSQNRVAEFHTELE
Sbjct: 61 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 120
Query: 431 RLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAA 252
RLP I+T++YI+HP++LEQYLMEGSYNK+FLAKGN+PAESYTFF+D LL+T+R EIA
Sbjct: 121 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 180
Query: 251 CIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILP 72
CIEKAY I EA R L ++ + + +Y KKR W LGP+N Y F S++ +P
Sbjct: 181 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIP 238
Query: 71 SAELAQQTIEYARHLEMIV 15
S ELA+Q IEYAR LEMIV
Sbjct: 239 STELAKQVIEYARQLEMIV 257
>BT019688-1|AAV38494.1| 257|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 8 protein.
Length = 257
Score = 314 bits (771), Expect = 2e-85
Identities = 149/259 (57%), Positives = 190/259 (73%)
Frame = -2
Query: 791 LYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILARDVLEIGAQ 612
+Y+ LK EW +K L KCGE L ++K+ L +L FLP+ +++LILARD+LEIGAQ
Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 60
Query: 611 WAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELE 432
W++ KD+ +FERYM+QLKCYYFDYK+ LPESA+ +Q LSQNRVAEFHTELE
Sbjct: 61 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 120
Query: 431 RLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAA 252
RLP I+T++YI+HP++LEQYLMEGSYNK+FLAKGN+PAESYTFF+D LL+T+R EIA
Sbjct: 121 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 180
Query: 251 CIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILP 72
CIEKAY I EA R L ++ + + +Y KKR LGP+N Y F S++ +P
Sbjct: 181 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGCVLGPNNYYSFASQQ--QKPEDTTIP 238
Query: 71 SAELAQQTIEYARHLEMIV 15
S ELA+Q IEYAR LEMIV
Sbjct: 239 STELAKQVIEYARQLEMIV 257
>X65293-1|CAA46388.1| 737|Homo sapiens protein kinase C epsilon
protein.
Length = 737
Score = 31.9 bits (69), Expect = 2.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 326 PLLRIFCCSCPPLNTVLEQAGV*YKDLFL*HQLEDAQVLCETRPLGFEKAGIIDSILT 499
P R + L Q GV Y+DL L + L DA+ C+ G K GI++ + T
Sbjct: 507 PRSRFYAAEVTSALMFLHQHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT 564
>BC109034-1|AAI09035.1| 737|Homo sapiens protein kinase C, epsilon
protein.
Length = 737
Score = 31.9 bits (69), Expect = 2.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 326 PLLRIFCCSCPPLNTVLEQAGV*YKDLFL*HQLEDAQVLCETRPLGFEKAGIIDSILT 499
P R + L Q GV Y+DL L + L DA+ C+ G K GI++ + T
Sbjct: 507 PRSRFYAAEVTSALMFLHQHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT 564
>BC109033-1|AAI09034.1| 737|Homo sapiens protein kinase C, epsilon
protein.
Length = 737
Score = 31.9 bits (69), Expect = 2.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 326 PLLRIFCCSCPPLNTVLEQAGV*YKDLFL*HQLEDAQVLCETRPLGFEKAGIIDSILT 499
P R + L Q GV Y+DL L + L DA+ C+ G K GI++ + T
Sbjct: 507 PRSRFYAAEVTSALMFLHQHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT 564
>AC017006-1|AAX93253.1| 258|Homo sapiens unknown protein.
Length = 258
Score = 31.9 bits (69), Expect = 2.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 326 PLLRIFCCSCPPLNTVLEQAGV*YKDLFL*HQLEDAQVLCETRPLGFEKAGIIDSILT 499
P R + L Q GV Y+DL L + L DA+ C+ G K GI++ + T
Sbjct: 28 PRSRFYAAEVTSALMFLHQHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT 85
>CR456377-1|CAG30263.1| 615|Homo sapiens Em:AP000557.1 protein.
Length = 615
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 812 TVKDVATLYQNLKTEWAKKPRKLDKCGELLNK 717
T KD ATL Q+ KT W +P + CG++ +
Sbjct: 513 TYKDPATLRQHEKTHWLTRPFPCNICGKMFTQ 544
>BC094787-1|AAH94787.1| 615|Homo sapiens HIC2 protein protein.
Length = 615
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 812 TVKDVATLYQNLKTEWAKKPRKLDKCGELLNK 717
T KD ATL Q+ KT W +P + CG++ +
Sbjct: 513 TYKDPATLRQHEKTHWLTRPFPCNICGKMFTQ 544
>BC032477-1|AAH32477.1| 294|Homo sapiens TMC4 protein protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 568 MYLSKALTSFTATAHCAPISNTSLAKINSFWFAATLLLGRNVNCVRAIFILFKSSP 735
++ K LT F+ C+P + T A +F+F LLLG ++ V ++ +F P
Sbjct: 145 LFYLKKLTLFST---CSPAARTFRASAANFFFPLVLLLGLAISSVPLLYSIFLIPP 197
>BC025323-1|AAH25323.1| 706|Homo sapiens transmembrane channel-like
4 protein.
Length = 706
Score = 31.1 bits (67), Expect = 5.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 568 MYLSKALTSFTATAHCAPISNTSLAKINSFWFAATLLLGRNVNCVRAIFILFKSSP 735
++ K LT F+ C+P + T A +F+F LLLG ++ V ++ +F P
Sbjct: 557 LFYLKKLTLFST---CSPAARTFRASAANFFFPLVLLLGLAISSVPLLYSIFLIPP 609
>AY236492-1|AAP69870.1| 712|Homo sapiens transmembrane channel-like
protein 4 protein.
Length = 712
Score = 31.1 bits (67), Expect = 5.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 568 MYLSKALTSFTATAHCAPISNTSLAKINSFWFAATLLLGRNVNCVRAIFILFKSSP 735
++ K LT F+ C+P + T A +F+F LLLG ++ V ++ +F P
Sbjct: 563 LFYLKKLTLFST---CSPAARTFRASAANFFFPLVLLLGLAISSVPLLYSIFLIPP 615
>AL162003-1|CAB82344.1| 315|Homo sapiens hypothetical protein
protein.
Length = 315
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 812 TVKDVATLYQNLKTEWAKKPRKLDKCGELLNK 717
T KD ATL Q+ KT W +P + CG++ +
Sbjct: 213 TYKDPATLRQHEKTHWLTRPFPCNICGKMFTQ 244
>AF349035-1|AAK72951.1| 597|Homo sapiens HIC-3 protein.
Length = 597
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 812 TVKDVATLYQNLKTEWAKKPRKLDKCGELLNK 717
T KD ATL Q+ KT W +P + CG++ +
Sbjct: 495 TYKDPATLRQHEKTHWLTRPFPCNICGKMFTQ 526
>AB028943-1|BAA82972.2| 638|Homo sapiens KIAA1020 protein protein.
Length = 638
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 812 TVKDVATLYQNLKTEWAKKPRKLDKCGELLNK 717
T KD ATL Q+ KT W +P + CG++ +
Sbjct: 536 TYKDPATLRQHEKTHWLTRPFPCNICGKMFTQ 567
>AY263166-1|AAP78781.1| 706|Homo sapiens TMC4 protein protein.
Length = 706
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 586 LTSFTATAHCAPISNTSLAKINSFWFAATLLLGRNVNCVRAIFILFKSSP 735
L T + C+P + T A +F+F LLLG ++ V ++ +F P
Sbjct: 560 LKKVTLFSTCSPAARTFRASAANFFFPLVLLLGLAISSVPLLYSIFLIPP 609
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,674,436
Number of Sequences: 237096
Number of extensions: 2420106
Number of successful extensions: 6123
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6118
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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