Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a04
(816 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY084160-1|AAL89898.1| 264|Drosophila melanogaster RE36854p pro... 263 2e-70
AF145314-1|AAF08395.1| 264|Drosophila melanogaster 26S proteaso... 263 2e-70
AE014296-2760|AAF49445.1| 264|Drosophila melanogaster CG4157-PA... 263 2e-70
AY075229-1|AAL68096.1| 262|Drosophila melanogaster AT18239p pro... 180 2e-45
AE014296-2456|AAS65003.1| 262|Drosophila melanogaster CG11552-P... 180 2e-45
BT004870-1|AAO45226.1| 618|Drosophila melanogaster LD38858p pro... 30 3.3
AE014298-3092|AAN09531.1| 579|Drosophila melanogaster CG15445-P... 30 3.3
AE014298-3091|AAF50848.2| 618|Drosophila melanogaster CG15445-P... 30 3.3
AE014298-3090|AAN09530.2| 607|Drosophila melanogaster CG15445-P... 30 3.3
AE014298-3089|AAN09529.2| 646|Drosophila melanogaster CG15445-P... 30 3.3
>AY084160-1|AAL89898.1| 264|Drosophila melanogaster RE36854p
protein.
Length = 264
Score = 263 bits (645), Expect = 2e-70
Identities = 135/265 (50%), Positives = 178/265 (67%), Gaps = 2/265 (0%)
Frame = -2
Query: 803 DVATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPS--NNVAANQKELILARDV 630
+V +LY+ L EW+K+P KCG+LL+++K+AL ++ FLP+ N+ +++K+LILAR V
Sbjct: 3 NVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSV 62
Query: 629 LEIGAQWAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAE 450
LE+ + +V KD+ AFERYM+QLKCYY+DY + ES + LS NRV++
Sbjct: 63 LEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSD 122
Query: 449 FHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETV 270
FHTELE L VDVI+ + +IR LALEQY+MEG YNKIF AK VP E Y++FMD LLETV
Sbjct: 123 FHTELELLSVDVIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETV 182
Query: 269 RGEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVA 90
R EI ACIEK+Y I +AA+RLNL + +G KR W+L Y FT SV
Sbjct: 183 RDEIGACIEKSYDKISAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDR---SVK 239
Query: 89 FSGILPSAELAQQTIEYARHLEMIV 15
+LPS ELA+Q + YAR LEMIV
Sbjct: 240 PKELLPSEELAEQVLSYARDLEMIV 264
>AF145314-1|AAF08395.1| 264|Drosophila melanogaster 26S proteasome
regulatory complexsubunit p30 protein.
Length = 264
Score = 263 bits (645), Expect = 2e-70
Identities = 135/265 (50%), Positives = 178/265 (67%), Gaps = 2/265 (0%)
Frame = -2
Query: 803 DVATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPS--NNVAANQKELILARDV 630
+V +LY+ L EW+K+P KCG+LL+++K+AL ++ FLP+ N+ +++K+LILAR V
Sbjct: 3 NVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSV 62
Query: 629 LEIGAQWAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAE 450
LE+ + +V KD+ AFERYM+QLKCYY+DY + ES + LS NRV++
Sbjct: 63 LEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSD 122
Query: 449 FHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETV 270
FHTELE L VDVI+ + +IR LALEQY+MEG YNKIF AK VP E Y++FMD LLETV
Sbjct: 123 FHTELELLSVDVIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETV 182
Query: 269 RGEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVA 90
R EI ACIEK+Y I +AA+RLNL + +G KR W+L Y FT SV
Sbjct: 183 RDEIGACIEKSYDKISAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDR---SVK 239
Query: 89 FSGILPSAELAQQTIEYARHLEMIV 15
+LPS ELA+Q + YAR LEMIV
Sbjct: 240 PKELLPSEELAEQVLSYARDLEMIV 264
>AE014296-2760|AAF49445.1| 264|Drosophila melanogaster CG4157-PA
protein.
Length = 264
Score = 263 bits (645), Expect = 2e-70
Identities = 135/265 (50%), Positives = 178/265 (67%), Gaps = 2/265 (0%)
Frame = -2
Query: 803 DVATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPS--NNVAANQKELILARDV 630
+V +LY+ L EW+K+P KCG+LL+++K+AL ++ FLP+ N+ +++K+LILAR V
Sbjct: 3 NVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSV 62
Query: 629 LEIGAQWAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAE 450
LE+ + +V KD+ AFERYM+QLKCYY+DY + ES + LS NRV++
Sbjct: 63 LEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSD 122
Query: 449 FHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETV 270
FHTELE L VDVI+ + +IR LALEQY+MEG YNKIF AK VP E Y++FMD LLETV
Sbjct: 123 FHTELELLSVDVIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETV 182
Query: 269 RGEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVA 90
R EI ACIEK+Y I +AA+RLNL + +G KR W+L Y FT SV
Sbjct: 183 RDEIGACIEKSYDKISAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDR---SVK 239
Query: 89 FSGILPSAELAQQTIEYARHLEMIV 15
+LPS ELA+Q + YAR LEMIV
Sbjct: 240 PKELLPSEELAEQVLSYARDLEMIV 264
>AY075229-1|AAL68096.1| 262|Drosophila melanogaster AT18239p
protein.
Length = 262
Score = 180 bits (438), Expect = 2e-45
Identities = 99/265 (37%), Positives = 150/265 (56%), Gaps = 3/265 (1%)
Frame = -2
Query: 800 VATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTF--LPSNNVAANQKELILARDVL 627
++ LY LK EW+K L C LL+ K+ L + F + + + + + +LI +R++L
Sbjct: 1 MSNLYTELKNEWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQKDQLIKSREML 60
Query: 626 EIGAQWAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEF 447
EI + ++ +KD AFERYM+QL YY+DY +L S + L+ NR+A+F
Sbjct: 61 EIAVEHSITIKDYAAFERYMAQLNTYYYDYDKYLESSKHMYKFMGLNLLYMLATNRLADF 120
Query: 446 HTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVR 267
H ELERLP ++ D +I+ LALE Y MEG YNKI AK ++P+E Y+ FMD L+ T R
Sbjct: 121 HIELERLPTALLLHDSFIQPVLALENYYMEGRYNKILQAKKSMPSEIYSNFMDILVNTAR 180
Query: 266 GEIAACIEKAYHTIPCAEAARRLNL-SSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVA 90
EIA+C+EK+Y + AA+RL L + + E KR W L + Y + +
Sbjct: 181 EEIASCMEKSYLKMAPKLAAQRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPME 240
Query: 89 FSGILPSAELAQQTIEYARHLEMIV 15
+P+ ++A + YA+ LE IV
Sbjct: 241 ---KVPAKDIATHNLTYAQELEKIV 262
>AE014296-2456|AAS65003.1| 262|Drosophila melanogaster CG11552-PA
protein.
Length = 262
Score = 180 bits (438), Expect = 2e-45
Identities = 99/265 (37%), Positives = 150/265 (56%), Gaps = 3/265 (1%)
Frame = -2
Query: 800 VATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTF--LPSNNVAANQKELILARDVL 627
++ LY LK EW+K L C LL+ K+ L + F + + + + + +LI +R++L
Sbjct: 1 MSNLYTELKNEWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQKDQLIKSREML 60
Query: 626 EIGAQWAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEF 447
EI + ++ +KD AFERYM+QL YY+DY +L S + L+ NR+A+F
Sbjct: 61 EIAVEHSITIKDYAAFERYMAQLNTYYYDYDKYLESSKHMYKFMGLNLLYMLATNRLADF 120
Query: 446 HTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVR 267
H ELERLP ++ D +I+ LALE Y MEG YNKI AK ++P+E Y+ FMD L+ T R
Sbjct: 121 HIELERLPTALLLHDSFIQPVLALENYYMEGRYNKILQAKKSMPSEIYSNFMDILVNTAR 180
Query: 266 GEIAACIEKAYHTIPCAEAARRLNL-SSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVA 90
EIA+C+EK+Y + AA+RL L + + E KR W L + Y + +
Sbjct: 181 EEIASCMEKSYLKMAPKLAAQRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPME 240
Query: 89 FSGILPSAELAQQTIEYARHLEMIV 15
+P+ ++A + YA+ LE IV
Sbjct: 241 ---KVPAKDIATHNLTYAQELEKIV 262
>BT004870-1|AAO45226.1| 618|Drosophila melanogaster LD38858p
protein.
Length = 618
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 683 PSNNVAANQKELILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 531
PS + A+ Q ++ L ++E A V ++ KA+ER+ S LK +Y D
Sbjct: 548 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 599
>AE014298-3092|AAN09531.1| 579|Drosophila melanogaster CG15445-PC,
isoform C protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 683 PSNNVAANQKELILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 531
PS + A+ Q ++ L ++E A V ++ KA+ER+ S LK +Y D
Sbjct: 509 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 560
>AE014298-3091|AAF50848.2| 618|Drosophila melanogaster CG15445-PA,
isoform A protein.
Length = 618
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 683 PSNNVAANQKELILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 531
PS + A+ Q ++ L ++E A V ++ KA+ER+ S LK +Y D
Sbjct: 548 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 599
>AE014298-3090|AAN09530.2| 607|Drosophila melanogaster CG15445-PB,
isoform B protein.
Length = 607
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 683 PSNNVAANQKELILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 531
PS + A+ Q ++ L ++E A V ++ KA+ER+ S LK +Y D
Sbjct: 537 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 588
>AE014298-3089|AAN09529.2| 646|Drosophila melanogaster CG15445-PD,
isoform D protein.
Length = 646
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 683 PSNNVAANQKELILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 531
PS + A+ Q ++ L ++E A V ++ KA+ER+ S LK +Y D
Sbjct: 576 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 627
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,087,420
Number of Sequences: 53049
Number of extensions: 744422
Number of successful extensions: 2359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2353
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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