Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a04
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69904-5|CAA93778.1| 250|Caenorhabditis elegans Hypothetical pr... 127 8e-30
U53336-10|AAA96182.2| 125|Caenorhabditis elegans Hypothetical p... 30 2.3
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 28 7.0
U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical pr... 28 7.0
L16622-6|AAA27913.2| 408|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 28 7.0
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z69904-5|CAA93778.1| 250|Caenorhabditis elegans Hypothetical
protein ZK20.5 protein.
Length = 250
Score = 127 bits (307), Expect = 8e-30
Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 2/264 (0%)
Frame = -2
Query: 800 VATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILA-RDVLE 624
++ ++NL WAK+P+ L ++ AL +LT + S + N K+ LA +D+ E
Sbjct: 1 MSAAHKNLLAVWAKEPKDLVA-------VEKALNELTKVLSASSDLNDKQSALASKDLYE 53
Query: 623 IGAQWAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXL-SQNRVAEF 447
I A+ D + F+ Y++Q+ YY PE++ L + NR+++F
Sbjct: 54 ISVLLAILKHDFETFDDYINQMHTYY----TMAPENSENKHLMTGLHLMFLLAANRLSDF 109
Query: 446 HTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVR 267
H LE++P ++ YI P+ +EQ LMEG+YNK+ L + N+P+ YT F+ +L+T+R
Sbjct: 110 HMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIR 169
Query: 266 GEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAF 87
EIA IEK++ + +A L + + + ++G++R W L + Y F E
Sbjct: 170 REIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQERKWHLDGER-YVFEIEVAQEKPV 228
Query: 86 SGILPSAELAQQTIEYARHLEMIV 15
+ L + +A QT+ YA+ LE IV
Sbjct: 229 N--LDTVRVATQTLFYAKQLEQIV 250
>U53336-10|AAA96182.2| 125|Caenorhabditis elegans Hypothetical
protein K07C11.10 protein.
Length = 125
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 209 ARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSV-AFSGILPSAELAQQTIEYAR 33
A N ++ V+ G+K +L D CY F E LT + ++P + Q +E +
Sbjct: 19 ATEKNEKQERVVMSQGEKLEEKLFVDECYLFQDETLTPIFCKPKLIPLKTITTQKLEKMQ 78
Query: 32 HLEM 21
+M
Sbjct: 79 REQM 82
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 806 KDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIAL 702
K+ T+ LK EW K + L C E K KI L
Sbjct: 105 KEHDTVRNALKVEWTKATKSLHDCEESYEKSKITL 139
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 806 KDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIAL 702
K+ T+ LK EW K + L C E K KI L
Sbjct: 105 KEHDTVRNALKVEWTKATKSLHDCEESYEKSKITL 139
>Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical
protein ZK262.8 protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -2
Query: 143 LGPDNCYRFTSEELTSVAFSG---ILPSAELAQQTIEYARHLEMIV 15
LG CY + + + TS + ++ + E ++++EY R LEM++
Sbjct: 294 LGTKRCYEYRATDPTSASERNNELVMSTLEGIRESVEYLRSLEMVL 339
>Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical
protein T06G6.1 protein.
Length = 340
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 574 LSKALTSFTATAHCAPISNTSLAKINSFWFAATLLLGRNV--NCVRAIFIL 720
L+ ALTS T +CA IS L W A L N+ N R I I+
Sbjct: 19 LASALTSVTLKFNCAFISTIVLISYCFSWLAIQALWNNNIFSNSTRLILIV 69
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 734 GELLNKIKIALTQLTFLPSNNVAANQKELI 645
G +LN + I +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136
>U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical
protein C37A2.3 protein.
Length = 442
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 122 RFTSEELTSVAFSGILPSAELAQQTIEYAR 33
+F E L +VA G+LP + +TIEYAR
Sbjct: 295 QFNDERLVTVAV-GLLPLQKCIDETIEYAR 323
>L16622-6|AAA27913.2| 408|Caenorhabditis elegans Hypothetical
protein C02D5.1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 122 RFTSEELTSVAFSGILPSAELAQQTIEYAR 33
+F E L +VA G+LP + +TIEYAR
Sbjct: 261 QFNDERLVTVAV-GLLPLQKCINETIEYAR 289
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 734 GELLNKIKIALTQLTFLPSNNVAANQKELI 645
G +LN + I +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 531 PPPGVCIHKPTVRIESIIPAFSKP-SGRVSHRT 436
PPP V PT I +++P S P SG VS T
Sbjct: 2205 PPPSVATAGPTGPILTVVPVSSAPTSGAVSSTT 2237
>AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical
protein T20H9.6 protein.
Length = 758
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 803 DVATLYQNLKTEWAKKP--RKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILARDV 630
D+ ++ NLKT+W K + + G+ L +K T T + +N + + E + +++
Sbjct: 334 DIWNIFDNLKTDWINKTVYGQAEHIGKALQTLK---TVQTNVQDSNESIRRGENDMLKEI 390
Query: 629 LEIGAQWAVAVKDVKAFERYMSQLK 555
++ ++ VK + E ++ ++
Sbjct: 391 TDVHSKVIRLVKYAETVEPFIGSIE 415
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,694,415
Number of Sequences: 27780
Number of extensions: 385058
Number of successful extensions: 1001
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -