Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a03
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.1  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   2.4  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   4.3  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   5.6  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   7.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   9.9  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   9.9  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -1

Query: 355  CNAVIMNSTLASSVAPYSDVEPAEQVT---EDTQ---LLPNKEKI 239
            CN++++NSTL+S + P  D   + +V    ED     L PNK K+
Sbjct: 1089 CNSIVINSTLSSIIVPCYDRPISSRVNSIIEDIARIGLAPNKVKL 1133


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = -1

Query: 391 LPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVEAIVVKE 212
           + +  E     D   V+M     ++   YS  EP EQ     Q   NK+ + V+ + +  
Sbjct: 39  IKKAHELSVLCDAKVVVMIFDSKNACHVYSSEEPEEQRDALLQKFLNKDFVTVDPLRIAS 98

Query: 211 LTSHGA 194
           +T++ A
Sbjct: 99  VTTYSA 104


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 460 KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDY 365
           K+  K + + + S  IP+LH+ S+   E +D+
Sbjct: 155 KKLKKDVDERVVSKDIPKLHRDSVESPESQDW 186


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = -1

Query: 757 ISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQ 578
           I   V+NN K   +   D+Q+++I PQ       +        I  R++    + + +NQ
Sbjct: 208 IMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQ 267

Query: 577 IH 572
           ++
Sbjct: 268 LY 269


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 204 DVNSFTTIASTGIFSLFGNNCVSSVTCSAGSTS 302
           D+     + + GI +LFG  C S  T + GS S
Sbjct: 431 DMEEIEKVEAGGICALFGIECASGDTFTDGSVS 463


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 763 DLISYDVMNNKKN--DDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAE 596
           D +  D+ N K N  D+ GRS     +I+ QE  IE      +TL        C I+E
Sbjct: 497 DGLQKDLKNTKGNLDDEIGRSAFLKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISE 554


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 462 RNKRQNRYSNSYK-AMAYRSYIKAVYRKKR 376
           R++  NRY NSY+ +   R +    YRK+R
Sbjct: 217 RDRDSNRYRNSYRPSRPQREHSPGNYRKER 246


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 382 KEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNK 248
           ++ K YA+  + V  +  L S ++P   V P  ++  +T+ +P+K
Sbjct: 347 EKNKPYALRTDEVDNDRILPSVLSPRDRVNPVMKIGPETKPVPSK 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,650
Number of Sequences: 5004
Number of extensions: 56171
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)