Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a03
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 40 0.002
03_05_0806 + 27846204-27846497,27847309-27847683 40 0.002
03_01_0073 + 599626-599856,599960-600041,600646-600689,601303-60... 40 0.002
02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216... 31 1.1
02_02_0443 + 10329823-10329951,10331169-10331234,10331298-103313... 31 1.5
02_01_0692 + 5179778-5181847 31 1.5
03_06_0650 - 35292062-35292079,35292365-35292955 30 1.9
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215... 30 1.9
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 29 3.4
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467... 29 3.4
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264... 29 4.5
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 29 5.9
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 28 7.8
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841... 28 7.8
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/39 (35%), Positives = 29/39 (74%)
Frame = -1
Query: 643 DTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
DTL IA+++ +A++KR+N + D ++FA +T+++P+
Sbjct: 76 DTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPL 114
>03_05_0806 + 27846204-27846497,27847309-27847683
Length = 222
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = -1
Query: 655 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVL 509
V+ GDT+ IAL++ + ++KR N + D+ I+ R + +P++ +L
Sbjct: 82 VRRGDTVPGIALKYSIQVTDIKRFNNMMSDHGIYLRERLLIPISNPEIL 130
>03_01_0073 +
599626-599856,599960-600041,600646-600689,601303-601411,
601498-601964
Length = 310
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/48 (31%), Positives = 33/48 (68%)
Frame = -1
Query: 670 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
+I +V DTL +A+++ +A++KR+N + D ++FA +T+++P+
Sbjct: 56 YILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPL 103
>02_01_0321 -
2162015-2162134,2162763-2162846,2162931-2163011,
2163690-2163867,2163946-2164089,2164194-2164240,
2164520-2164576,2165286-2165408,2165496-2165618,
2165959-2166072,2166169-2166176,2166272-2166458,
2174597-2174763,2174924-2175008,2176632-2176820,
2177727-2177918,2178434-2178634
Length = 699
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 176 PFQSKISTM*CQFFHNYSFYRNLFFVW 256
P Q + C F NY YRNLF +W
Sbjct: 658 PQQEHVGCFNCSLFFNYPNYRNLFPIW 684
>02_02_0443 +
10329823-10329951,10331169-10331234,10331298-10331362,
10331534-10331666
Length = 130
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = -1
Query: 457 QTPKSIQQLLQSNGIPQLHQSSLPQK--EEKDYAIDCNAVIMN-STLASSVAPYSD--VE 293
Q+ ++ QL++ + Q H + LP+K + A + V+ ++ SS+ Y D ++
Sbjct: 27 QSTSNLLQLMEESSPAQAHLAKLPKKLLAKASLAKNTGQVLHQLPSVISSLDAYMDASLQ 86
Query: 292 PAEQVTEDTQLLPNKEKIPVEAIV 221
A Q+ TQLL N E + +I+
Sbjct: 87 SASQIKTVTQLLSNMENNQLRSIL 110
>02_01_0692 + 5179778-5181847
Length = 689
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 676 EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
+H + V GDT+ AIA RF E+ N + + + I+ T+ VP+
Sbjct: 200 KHMVTYLVTWGDTVSAIAARFRVDAQEVLDANTLTESSIIYPFTTLLVPL 249
>03_06_0650 - 35292062-35292079,35292365-35292955
Length = 202
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 568 DNEIFARRTIKVPVTPYSVLTEL 500
++E FAR + V +TP S++TEL
Sbjct: 115 EHEFFARNNLSVDITPQSIMTEL 137
>02_01_0319 -
2148788-2148892,2149474-2149557,2149643-2149723,
2150303-2150480,2150811-2150954,2151048-2151094,
2151353-2151409,2151566-2151664,2151867-2151989,
2152083-2152205,2152594-2152707,2152972-2153160,
2153412-2153578,2153904-2153988,2155431-2155628,
2155978-2156175
Length = 663
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 176 PFQSKISTM*CQFFHNYSFYRNLFFVW 256
P Q + C F NY YRN+F +W
Sbjct: 627 PQQEHVGCFNCSLFFNYPNYRNIFPIW 653
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = -1
Query: 442 IQQLLQSNGI--PQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTED 269
+Q+ Q G+ P+ H S E + + V++N+T S+ +S+ + AEQ +
Sbjct: 40 LQEYAQKAGLQTPEYHTSKEGPSHEPVFK---STVVINNTSYGSLPGFSNRKAAEQSAAE 96
Query: 268 TQL------LPNKEKIPVEAIVVKEL 209
L +P IP +VVKEL
Sbjct: 97 VALMEIVKSIPANANIPAVKLVVKEL 122
>01_05_0132 -
18446105-18446197,18446281-18446372,18446684-18446783,
18446855-18447046,18447216-18447536,18447848-18447943,
18448006-18448098,18448181-18448306,18448358-18449053,
18449130-18449162
Length = 613
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 820 VKVPXFTMKQRTRVMHSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFI 665
+K+P K+ T HSG D M+N K D+QL EH I
Sbjct: 290 IKLPIEATKEYTTKDHSGTDANQPSNMDNTKAQTTDMVDVQLQLKTMNEHLI 341
>07_03_0103 -
13425411-13425713,13425874-13425974,13426410-13426471,
13426951-13427123
Length = 212
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/90 (25%), Positives = 37/90 (41%)
Frame = -1
Query: 460 KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQ 281
K TP Q+L +S P HQ + EE + ++NS+ + PYS+ +
Sbjct: 85 KGTPTQQQKLAESILTPPEHQKKSTRAEESLALSPRSETVLNSSATTHTDPYSEGLAIPR 144
Query: 280 VTEDTQLLPNKEKIPVEAIVVKELTSHGAD 191
+D P+ + E + L GAD
Sbjct: 145 APDDIG-TPSIDLFTSEFPDIAALLDGGAD 173
>04_03_1002 - 21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = -1
Query: 457 QTPKSIQQLLQSNGIPQLHQSSLPQKEEKD-YAIDCNAVIMNSTLASSVAPYSDVEPAEQ 281
++P Q LLQ+ I L L EEKD I + S+ A +A + VE
Sbjct: 920 ESPLKSQVLLQAAEIENLKLDKLRLAEEKDGLEIHSQKLAEESSYAKELAAAAAVELKNL 979
Query: 280 VTEDTQLLPNKEKIPVEAIVVKELT 206
E T+L K+ + K+ T
Sbjct: 980 AEEVTRLSYENAKLNADLAAAKDQT 1004
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 462 EVEGVGSGCSDGINSVKTE 518
++ VGS CSDGINSV E
Sbjct: 648 DLADVGSECSDGINSVDVE 666
>01_03_0206 -
13783169-13783651,13783761-13783903,13783962-13784128,
13784641-13785149,13786031-13786312,13786397-13786792,
13787232-13787504
Length = 750
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 368 LCH*LQCCYYEQHFSVFCCSLFGRRTSRTS 279
LCH C++ + ++ +C S FGR +R S
Sbjct: 85 LCH----CFHHESYAAYCASRFGRLINRPS 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,878,119
Number of Sequences: 37544
Number of extensions: 339785
Number of successful extensions: 996
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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