Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a03
(826 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051872-1|AAK93296.1| 271|Drosophila melanogaster LD36653p pro... 75 1e-13
AE013599-468|AAF59218.1| 271|Drosophila melanogaster CG17985-PA... 75 1e-13
BT003753-1|AAO41417.1| 343|Drosophila melanogaster RH05737p pro... 42 8e-04
AY051674-1|AAK93098.1| 366|Drosophila melanogaster LD22649p pro... 42 8e-04
AE014297-1831|AAG22152.1| 343|Drosophila melanogaster CG12207-P... 42 8e-04
AE014297-1830|AAN13603.1| 366|Drosophila melanogaster CG12207-P... 42 8e-04
AE014297-1829|AAN13602.1| 366|Drosophila melanogaster CG12207-P... 42 8e-04
BT022601-1|AAY55017.1| 134|Drosophila melanogaster IP06843p pro... 33 0.36
AE014298-680|AAF45985.1| 186|Drosophila melanogaster CG15471-PA... 33 0.36
AY069572-1|AAL39717.1| 510|Drosophila melanogaster LD31122p pro... 31 1.4
AY060416-1|AAL25455.1| 358|Drosophila melanogaster LD37618p pro... 31 1.4
AE014296-2923|AAF49329.1| 680|Drosophila melanogaster CG6311-PB... 31 1.4
AY124548-1|AAM94031.1| 499|Drosophila melanogaster tyrosylprote... 31 1.9
AY119073-1|AAM50933.1| 499|Drosophila melanogaster LP09162p pro... 31 1.9
AE014298-1921|AAF48286.2| 499|Drosophila melanogaster CG32632-P... 31 1.9
>AY051872-1|AAK93296.1| 271|Drosophila melanogaster LD36653p
protein.
Length = 271
Score = 74.9 bits (176), Expect = 1e-13
Identities = 32/56 (57%), Positives = 48/56 (85%)
Frame = -1
Query: 676 EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVL 509
E+ +E +VQEGDTLQA+ALRF+ S+A++KR+N+I ++NEI A R I++PVT ++VL
Sbjct: 54 ENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIRIPVTVHNVL 109
>AE013599-468|AAF59218.1| 271|Drosophila melanogaster CG17985-PA
protein.
Length = 271
Score = 74.9 bits (176), Expect = 1e-13
Identities = 32/56 (57%), Positives = 48/56 (85%)
Frame = -1
Query: 676 EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVL 509
E+ +E +VQEGDTLQA+ALRF+ S+A++KR+N+I ++NEI A R I++PVT ++VL
Sbjct: 54 ENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIRIPVTVHNVL 109
>BT003753-1|AAO41417.1| 343|Drosophila melanogaster RH05737p
protein.
Length = 343
Score = 42.3 bits (95), Expect = 8e-04
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = -1
Query: 688 IKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
++ E I V++ DTLQ IAL++ C+ +++R N++ + +F R+ + VPV
Sbjct: 32 LRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPV 85
>AY051674-1|AAK93098.1| 366|Drosophila melanogaster LD22649p
protein.
Length = 366
Score = 42.3 bits (95), Expect = 8e-04
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = -1
Query: 688 IKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
++ E I V++ DTLQ IAL++ C+ +++R N++ + +F R+ + VPV
Sbjct: 55 LRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPV 108
>AE014297-1831|AAG22152.1| 343|Drosophila melanogaster CG12207-PA,
isoform A protein.
Length = 343
Score = 42.3 bits (95), Expect = 8e-04
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = -1
Query: 688 IKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
++ E I V++ DTLQ IAL++ C+ +++R N++ + +F R+ + VPV
Sbjct: 32 LRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPV 85
>AE014297-1830|AAN13603.1| 366|Drosophila melanogaster CG12207-PC,
isoform C protein.
Length = 366
Score = 42.3 bits (95), Expect = 8e-04
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = -1
Query: 688 IKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
++ E I V++ DTLQ IAL++ C+ +++R N++ + +F R+ + VPV
Sbjct: 55 LRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPV 108
>AE014297-1829|AAN13602.1| 366|Drosophila melanogaster CG12207-PB,
isoform B protein.
Length = 366
Score = 42.3 bits (95), Expect = 8e-04
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = -1
Query: 688 IKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
++ E I V++ DTLQ IAL++ C+ +++R N++ + +F R+ + VPV
Sbjct: 55 LRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPV 108
>BT022601-1|AAY55017.1| 134|Drosophila melanogaster IP06843p
protein.
Length = 134
Score = 33.5 bits (73), Expect = 0.36
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 643 DTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
DT+ +AL++ SI + R N++H + + ARR + VP+
Sbjct: 38 DTMTRLALKYDTSIGRICRANRMHSQDVLQARRHVWVPI 76
>AE014298-680|AAF45985.1| 186|Drosophila melanogaster CG15471-PA
protein.
Length = 186
Score = 33.5 bits (73), Expect = 0.36
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 643 DTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 527
DT+ +AL++ SI + R N++H + + ARR + VP+
Sbjct: 90 DTMTRLALKYDTSIGRICRANRMHSQDVLQARRHVWVPI 128
>AY069572-1|AAL39717.1| 510|Drosophila melanogaster LD31122p
protein.
Length = 510
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +3
Query: 198 PCDVNSFTTIASTGIFSLFGNNCVSSVTCSAGSTSE*GATEDAKVLFIITALQSMA*SFS 377
PC +N S I + N +S+ T S+ S++ T A +A +S A +
Sbjct: 414 PCGINEVAIKYS--ILPILPLNGISTATTSSSSSAAATPTPIASTSAAASATKSAA--ST 469
Query: 378 SFCGKLL*CNCGMP 419
+ CGKL CN G+P
Sbjct: 470 NNCGKLYLCNLGIP 483
>AY060416-1|AAL25455.1| 358|Drosophila melanogaster LD37618p
protein.
Length = 358
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +3
Query: 198 PCDVNSFTTIASTGIFSLFGNNCVSSVTCSAGSTSE*GATEDAKVLFIITALQSMA*SFS 377
PC +N S I + N +S+ T S+ S++ T A +A +S A +
Sbjct: 262 PCGINEVAIKYS--ILPILPLNGISTATTSSSSSAAATPTPIASTSAAASATKSAA--ST 317
Query: 378 SFCGKLL*CNCGMP 419
+ CGKL CN G+P
Sbjct: 318 NNCGKLYLCNLGIP 331
>AE014296-2923|AAF49329.1| 680|Drosophila melanogaster CG6311-PB
protein.
Length = 680
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +3
Query: 198 PCDVNSFTTIASTGIFSLFGNNCVSSVTCSAGSTSE*GATEDAKVLFIITALQSMA*SFS 377
PC +N S I + N +S+ T S+ S++ T A +A +S A +
Sbjct: 584 PCGINEVAIKYS--ILPILPLNGISTATTSSSSSAAATPTPIASTSAAASATKSAA--ST 639
Query: 378 SFCGKLL*CNCGMP 419
+ CGKL CN G+P
Sbjct: 640 NNCGKLYLCNLGIP 653
>AY124548-1|AAM94031.1| 499|Drosophila melanogaster tyrosylprotein
sulfotransferase protein.
Length = 499
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 778 MHSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQ 632
M S +D + ++NN N DN + + KI P++H + Q + LQ
Sbjct: 367 MSSSEDDNTNTIINNSNNKDNNNNQYTINKIIPEQHSRQRQHVQQQHLQ 415
>AY119073-1|AAM50933.1| 499|Drosophila melanogaster LP09162p
protein.
Length = 499
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 778 MHSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQ 632
M S +D + ++NN N DN + + KI P++H + Q + LQ
Sbjct: 367 MSSSEDDNTNTIINNSNNKDNNNNQYTINKIIPEQHSRQRQHVQQQHLQ 415
>AE014298-1921|AAF48286.2| 499|Drosophila melanogaster CG32632-PB
protein.
Length = 499
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 778 MHSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQ 632
M S +D + ++NN N DN + + KI P++H + Q + LQ
Sbjct: 367 MSSSEDDNTNTIINNSNNKDNNNNQYTINKIIPEQHSRQRQHVQQQHLQ 415
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,799,412
Number of Sequences: 53049
Number of extensions: 628045
Number of successful extensions: 1601
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -