Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a02
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 36 0.009
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 29 0.61
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 3.3
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 4.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 4.3
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 4.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 7.6
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.6
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 7.6
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 35.5 bits (78), Expect = 0.009
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -3
Query: 267 SEEKLSMSVE-IPDGNNVRKTGYHSRDQPIWRIDYS--KHGEPSVNVFDDRLRGKIIHAG 97
+ EK S SVE +P N ++T HS P+ ID S K G P + L IIH+
Sbjct: 135 NSEKNSTSVEDLPGSNRTQQTSSHSLLHPLHPIDVSLSKEGLPCLVDSLGLLHCSIIHSY 194
Query: 96 MVEDNVL 76
V+D++L
Sbjct: 195 QVQDHIL 201
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.5 bits (63), Expect = 0.61
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +2
Query: 503 SVPIVLSIDLFLYLICCIDFCIKCFNVSSLVMMSHGIVGKFLHKTFCMSATTLSRASSCE 682
S+P + S+ L L + I+ IKCF S IVG + T S+ S AS+
Sbjct: 322 SLPSIQSLVLRLIHLGSIEHAIKCFQSSYNASFLVNIVG--VVATLSSSSEENSEASNLS 379
Query: 683 ERFSLS*NCETIL 721
F S N E IL
Sbjct: 380 TLFEKSGNFEEIL 392
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -3
Query: 291 NGRNEYGHSEEKLSMSVEIPDGNNVRKTGYHSRDQPIWRIDYSKHGEPSVNVFDDRLRGK 112
N +E H+ + S+S P GN T QP+ +DY + PS ++ +
Sbjct: 412 NTSSEQHHNSYRGSVSNSQPSGNLSESTNL----QPVQPVDYMSNSNPSYGSYNAEDQLT 467
Query: 111 IIHAGMVED 85
H G D
Sbjct: 468 NFHPGYAMD 476
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -3
Query: 753 AIILRNNGLIHKMVSQFQDKENLSSHDEARDNVVALMQNVLCKNFPTI 610
+IIL +M SQ D E+ ++HDE + N+ ++ +++ + P I
Sbjct: 544 SIILTRLETSIQMQSQILDVEDRANHDELQSNLCNVLTSIIRRFGPDI 591
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 705 FQDKENLSSHDEARDNVVALMQNVLCKNFPT 613
+Q H + ++N++ NV C+NFPT
Sbjct: 236 YQWSHEYRPHTQYQNNLLRAQPNVNCENFPT 266
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 359 YL*MDVKKYVNFIHTKSNRRTRSMEETNTDILK 261
Y DV+K VN++ K++ + + E+ NTD K
Sbjct: 61 YYYFDVEKSVNYLLQKASSKAGAKEKQNTDSQK 93
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 39 HRDARHLVSVLVPEHYP 89
H D RHL SVL+ H P
Sbjct: 922 HNDERHLYSVLIDGHCP 938
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 744 LRNNGLIHKMVSQFQDKENLSSHDEARDNVVALMQNVLCKNFPTIPCDIITKDETL 577
L NG+ H ++ + + + +L S D +V M+N+ KN PT D+TL
Sbjct: 192 LSKNGIKHLIIYKEKLRFSLESRKSRVDEIVNEMKNMCGKN-PTSELPTNYSDKTL 246
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 34 IHIGMQDISSRSLFQNIILDHSCMNDLPSQSIVKYVD 144
+HI D S +F + S ND+ S SI VD
Sbjct: 34 VHIETSDYSGNFVFDRVFHPSSTQNDIFSYSIESTVD 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,562
Number of Sequences: 5004
Number of extensions: 66024
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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