Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a02
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 31 0.86
09_04_0243 - 15975483-15975704,15976003-15976060,15976875-159772... 29 3.5
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 29 6.0
01_01_0186 + 1598046-1598234,1599215-1599277,1599359-1599448,159... 29 6.0
09_04_0002 - 13567257-13567373,13568049-13568243,13569750-135698... 28 8.0
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 28 8.0
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 28 8.0
>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 31.5 bits (68), Expect = 0.86
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 467 VLITGSCDKLFISVPIVLSIDLFLYLI-CCIDFCIKCFNVSSLVMMSHGIVG 619
V I K+ + + +VL I LFL I CC+D C++ S + + S +VG
Sbjct: 1016 VFIPSHYKKVHVQIHLVLLIHLFLLSIACCVDLCMRF--TSDVKIKSISVVG 1065
>09_04_0243 -
15975483-15975704,15976003-15976060,15976875-15977287,
15977530-15977538
Length = 233
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 560 FCIKCFNVSSLVMMSHGIVGKFLHKTFC 643
FCI CF++ +M+ GI+ +H + C
Sbjct: 122 FCIGCFSIVKEQIMTAGIISYLMHASVC 149
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 79 NIILDHSCMNDLPSQSIVKYVDAGLAVFRIVYSPYWLIPGVV 204
NI++D S L + K+++ F SPYW+ P V+
Sbjct: 539 NILVDPSGRVKLADFGMAKHINGQQCPFSFKGSPYWMAPEVI 580
>01_01_0186 +
1598046-1598234,1599215-1599277,1599359-1599448,
1599968-1600093,1600583-1600726,1600845-1601255,
1601283-1601364,1601403-1601491,1602250-1602471,
1602552-1602827,1603116-1603253,1603772-1604077,
1604203-1604421
Length = 784
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 303 KDAFNGRNEYGHSEEKLSMS-VEIPDGNNVRKTGYHSRDQPIWRIDYS--KHGEPSVNVF 133
+ + +G + G ++ K+S + +E+ G+ VRKT P W ++ HGE V F
Sbjct: 261 RQSSSGGSTSGIADNKVSQTFIEVEVGSLVRKTSTSKGPNPAWNSTFNLVLHGETGVVKF 320
Query: 132 D 130
+
Sbjct: 321 N 321
>09_04_0002 -
13567257-13567373,13568049-13568243,13569750-13569869,
13569958-13570028,13570066-13570126,13570170-13570202,
13570303-13570431,13571958-13572042,13572143-13572252,
13572534-13572606,13572688-13572810,13573111-13573289,
13573659-13573736,13573813-13573871,13574122-13574212,
13574265-13574442,13574553-13575088
Length = 745
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 33 YTHRDARHLVSVLVPEHYPRPFLHE*SSLSIYRQIR*RWARRVSNSLFAIL 185
YT D LV + H P+ F+ + +I +R WARRV IL
Sbjct: 623 YTTFDDNPLVDFFLVYHEPKKFVFLETPEAISSMLRPHWARRVDGMAQVIL 673
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = -3
Query: 795 VELTLLTIMSMQSRAIILRNNGLIHKMVSQFQDKENLSSHDEARDNVVALMQNVLCKNFP 616
+ + L+ +M + + R + VS + KE L SHD R VAL L + P
Sbjct: 513 MSVVLMVVMIVWHYVHVKRYKYELEHTVSTDKVKEMLESHDLKRVRGVALFYTELVQGIP 572
Query: 615 TIPCDIITKDETL 577
I +I K T+
Sbjct: 573 PIFPHLIEKIPTI 585
>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 79 NIILDHSCMNDLPSQSIVKYVDAGLAVFRIVYSPYWLIPGVV 204
NI++D + L + K+++ F SPYW+ P V+
Sbjct: 1070 NILVDPNGRVKLADFGMAKHINGQQCAFSFKGSPYWMAPEVI 1111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,033,924
Number of Sequences: 37544
Number of extensions: 411707
Number of successful extensions: 1091
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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