Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a02
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical ... 32 0.44
AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical ... 32 0.44
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ... 32 0.58
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 31 1.3
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 31 1.3
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 29 4.1
AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical ... 29 4.1
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 29 4.1
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 29 4.1
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF067211-6|AAC16989.1| 308|Caenorhabditis elegans Serpentine re... 28 7.2
AF067211-5|AAW88420.1| 329|Caenorhabditis elegans Serpentine re... 28 7.2
Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical pr... 28 9.5
U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical pr... 28 9.5
>AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical
protein Y53H1C.1b protein.
Length = 527
Score = 32.3 bits (70), Expect = 0.44
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +1
Query: 31 DIHIGMQDISSRSLFQNIILDHSCMNDLPSQSIVKYVDAGLAVFRIVYSPYWLI--PGVV 204
++++G + I+ ++ +I+ + +Q+ +Y+ AGL+ + SPY +I G+
Sbjct: 90 NVYVGWEGIAFSFMWVGVIMSFPASAAVQAQTFGQYIVAGLSPIWHLGSPYDVILERGLG 149
Query: 205 PSLPDVIPVRNFYRHRQFLFRMSVFVSSIERVLLFDFVWIKFTY 336
+L ++ V N Y ++ + +FV+ + + L + F Y
Sbjct: 150 FALIIILTVLNLYAIDKYASKFQIFVTIAKLLSLAIIIVTGFWY 193
>AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical
protein Y53H1C.1a protein.
Length = 541
Score = 32.3 bits (70), Expect = 0.44
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +1
Query: 31 DIHIGMQDISSRSLFQNIILDHSCMNDLPSQSIVKYVDAGLAVFRIVYSPYWLI--PGVV 204
++++G + I+ ++ +I+ + +Q+ +Y+ AGL+ + SPY +I G+
Sbjct: 90 NVYVGWEGIAFSFMWVGVIMSFPASAAVQAQTFGQYIVAGLSPIWHLGSPYDVILERGLG 149
Query: 205 PSLPDVIPVRNFYRHRQFLFRMSVFVSSIERVLLFDFVWIKFTY 336
+L ++ V N Y ++ + +FV+ + + L + F Y
Sbjct: 150 FALIIILTVLNLYAIDKYASKFQIFVTIAKLLSLAIIIVTGFWY 193
>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
protein R06B10.2 protein.
Length = 1014
Score = 31.9 bits (69), Expect = 0.58
Identities = 24/99 (24%), Positives = 37/99 (37%)
Frame = -3
Query: 696 KENLSSHDEARDNVVALMQNVLCKNFPTIPCDIITKDETLKHLXXXXXXXXXXXKRSMDK 517
+ L S E + + + +V K +P II KD+ K S K
Sbjct: 61 QRKLDSSSEQLEEQLMMFASVYEKTKGVVPGSIIPKDDVYK-TQLDALKIKWSKVDSFAK 119
Query: 516 TIGTDINNLSQLPVINTDDDANMPTEDGDRPKHHTSDWT 400
I +N + + + +DDDAN+ D DWT
Sbjct: 120 GIVIFLNEMESMEGVTSDDDANIKLSDMAPHLPKFKDWT 158
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Frame = +1
Query: 7 FLSNKVLLDIHIGMQDISSRSL---------FQNIILDHSCMNDLPSQSI 129
F++ L+D+++G I S + QN+ILD++CM + PS+++
Sbjct: 152 FVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAV 201
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Frame = +1
Query: 7 FLSNKVLLDIHIGMQDISSRSL---------FQNIILDHSCMNDLPSQSI 129
F++ L+D+++G I S + QN+ILD++CM + PS+++
Sbjct: 152 FVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAV 201
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +1
Query: 1 IDFLSNKV-LLDIHIGMQDISSRSLFQNIILDHSCMN-DLPSQSIVKYV-DAGLAVFRIV 171
ID N++ LL + ++++ L +N+ + H+ + D +SI+ + D L VF
Sbjct: 401 IDMWQNRLRLLKMAYKIRNLPQLELLENLYILHAAYSFDSDQKSILDVILDYTLGVF-CN 459
Query: 172 YSPYWLIPGVVPSLPDVIPVRNFYRHRQFLFRMSVFVS-SIERVLL 306
W+ G +P+ I +N FL ++ +F++ S R+LL
Sbjct: 460 QMMEWMTTGEIPTSDKWIIEKNEQSGELFLRKIPIFITDSDARILL 505
>AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical
protein H41C03.3 protein.
Length = 506
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Frame = +1
Query: 19 KVLLDIHIGMQDISSRS---LFQNIILDHSC---MND-LPSQSIVKYVDAGLAVFRIVYS 177
++L D + +Q +S + + +N L+ SC MN LPS + +K + G+A RIVY+
Sbjct: 111 RILADDKVYLQTVSGKDRVKIVENKNLNMSCSAIMNRILPSGNDLKPLKNGVAFARIVYT 170
Query: 178 PYWLI 192
Y +I
Sbjct: 171 DYEMI 175
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +1
Query: 1 IDFLSNKV-LLDIHIGMQDISSRSLFQNIILDHSCMN-DLPSQSIVKYV-DAGLAVFRIV 171
ID N++ LL + ++++ L +N+ + H+ + D +SI+ + D L VF
Sbjct: 401 IDMWQNRLRLLKMAYKIRNLPQLELLENLYILHAAYSFDSDQKSILDVILDYTLGVF-CN 459
Query: 172 YSPYWLIPGVVPSLPDVIPVRNFYRHRQFLFRMSVFVS-SIERVLL 306
W+ G +P+ I +N FL ++ +F++ S R+LL
Sbjct: 460 QMMEWMTTGEIPTSDKWIIEKNEQSGELFLRKIPIFITDSDARILL 505
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +1
Query: 1 IDFLSNKV-LLDIHIGMQDISSRSLFQNIILDHSCMN-DLPSQSIVKYV-DAGLAVFRIV 171
ID N++ LL + ++++ L +N+ + H+ + D +SI+ + D L VF
Sbjct: 401 IDMWQNRLRLLKMAYKIRNLPQLELLENLYILHAAYSFDSDQKSILDVILDYTLGVF-CN 459
Query: 172 YSPYWLIPGVVPSLPDVIPVRNFYRHRQFLFRMSVFVS-SIERVLL 306
W+ G +P+ I +N FL ++ +F++ S R+LL
Sbjct: 460 QMMEWMTTGEIPTSDKWIIEKNEQSGELFLRKIPIFITDSDARILL 505
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
protein F36D3.5 protein.
Length = 1152
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 166 IVYSPYWLIPGVVPSLPDVIPVRNFYRHRQFLFRMSVFVSSIERVLL 306
++ +P LI + S + + N +HRQFLF + F + +++V++
Sbjct: 571 LLKTPQALIKNIGTSTRVLEDLENVRQHRQFLFSVRNFTADVKKVIV 617
>AF067211-6|AAC16989.1| 308|Caenorhabditis elegans Serpentine
receptor, class z protein85, isoform a protein.
Length = 308
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 253 QFLFRMSVFVSSIERVLLFDFVWIKFTYFFTS 348
Q+ F +F + R L DF+W + +FF +
Sbjct: 111 QYFFPFHIFTRFLSRRNLPDFIWYLYAFFFVN 142
>AF067211-5|AAW88420.1| 329|Caenorhabditis elegans Serpentine
receptor, class z protein85, isoform b protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 253 QFLFRMSVFVSSIERVLLFDFVWIKFTYFFTS 348
Q+ F +F + R L DF+W + +FF +
Sbjct: 132 QYFFPFHIFTRFLSRRNLPDFIWYLYAFFFVN 163
>Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical
protein T19C4.2 protein.
Length = 313
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 535 FVLNLLYRLLYQM-F*CFVLSNDVTRNRREVLAQDILHERDHVVARFVV 678
F LN++Y L+Y M + + +++ ++ NR ++ L ER + F++
Sbjct: 81 FTLNIMYSLMYNMSYVQYAITSIISINRLSIIWNHFLFERLWIKYSFIL 129
>U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical
protein T22B7.7 protein.
Length = 393
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 449 MFASSSVLITGSCDKLFISVPIVLSIDLFLYLICCIDFCIKCFNVSSLVMMSHGIVGKF 625
MF+ +SV ++ D F+ V + SI F +C +D + F V+S V + + KF
Sbjct: 293 MFSKTSVRVSSIDDAEFMKVVEIGSILKFSAFVCNVDNKEQKFQVNSQVEVYNSNTNKF 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,335,790
Number of Sequences: 27780
Number of extensions: 376846
Number of successful extensions: 1119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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