Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a01
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   2.2  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    27   2.2  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   2.9  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   3.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   6.8  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   6.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.0  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 146 ADTKSEEVRKHCESTEVSFFRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 307
           A + S +V++  +   V  FRN +KG    P+ G      R +  KKFL R  D
Sbjct: 214 ASSGSFQVKRRWDEDVV--FRNTHKGVDDTPRPGFVNDMLRSEFHKKFLARFVD 265


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 102 VNIVDVLTFWT*G--AELTRRVRRCASIVSRQRFLSFV 209
           VNI D+L FWT G       RVR    + +RQ    FV
Sbjct: 228 VNIADMLQFWTSGKLRSTVHRVRIDPGVKTRQTIAYFV 265


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 215 YHYERKKPLSTHNACAPPHSSCQLCASSPECQYVNYIHAQP 93
           Y Y R     T  +C+ P + C    +SP   Y+NY    P
Sbjct: 384 YEYTRPTYGRTDTSCSAPGAFCSTQINSPS-SYINYSKCAP 423


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = +3

Query: 255 NLVVGISSIRSFYEGLTTPTDSRCHLAGAPH*NRWLIVSSKHSIHNGRHLRSTIFQTRLD 434
           N  + ++S  +   G  + TDSR + A +      L+ SS  S  NG H+      + + 
Sbjct: 304 NKQINLASAATNVTGYVSETDSRPNRANSLDSAVLLVQSSNKSNRNGHHISDPNLNSSIS 363

Query: 435 VKLNSFSRVTHSTLA*RTFHSSNISP--SDTSIGFFRSKQQPR 557
           +K  +     H++L        N+ P  + TS+      + PR
Sbjct: 364 LKF-APEDTAHNSLT----SQENVGPQVTTTSLSNMTVAESPR 401


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 203 FRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 307
           +RND   +    +  ND  R RD+ D  + ++ YD
Sbjct: 205 YRNDRNNW--RERTHNDRYRHRDKYDSGYFKKHYD 237


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 209 NDNKGYPVHPQNGNDEPRRRDQL 277
           N NK      +NGNDE R  D L
Sbjct: 419 NGNKSEQEEKENGNDETRSNDSL 441


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 189 QRFLSFVMITKVTLFILRMVTMNLVVGISSIRSFYEGLTTPTDSRCHL 332
           Q+FL F+  T +TLFIL  +T     G++   S +  + TP    C +
Sbjct: 724 QQFLVFLTFTGMTLFILYQLT--FPYGVAKDNSSF--IDTPLPHSCEM 767


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 272 DPYDEVHRYHSEDEQGNLCYH-YERKKPLSTHNACAPPHSSCQLCAS 135
           D +  + +   EDE+GNL +H  E  K  +     +PP S  +  AS
Sbjct: 251 DEFPMIEKLLREDEEGNLWFHASEDAKKFAEVYGHSPPASPSRTPAS 297


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 557 PWLLFAPKETY*SVTRRYIRRMKRSLRQ 474
           P+L    KE Y  V+RR++ R+K ++ Q
Sbjct: 312 PYLASVVKELYVHVSRRFMLRIKAAITQ 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,322
Number of Sequences: 5004
Number of extensions: 66022
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)