Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12a01
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 33 0.33
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 31 0.76
07_03_1697 - 28795521-28797328,28797430-28797550 30 1.8
02_05_0585 + 30155021-30155910,30156130-30157006 30 1.8
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272... 30 2.3
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 30 2.3
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 4.1
10_08_0674 + 19788198-19789817 29 5.4
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 29 5.4
11_06_0154 + 20707811-20708210,20709252-20709523 28 7.1
05_05_0290 - 23879064-23880035 28 7.1
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435... 28 9.4
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 28 9.4
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 504 ISPSDTSIGFFRSKQQPRPGLEVQGGTFAGSPTLTGLAHTS 626
+SP D +GF KQQ PG +GSP L G+A S
Sbjct: 688 VSPCDLQLGFSGQKQQILPGYGELRPAASGSPQLGGMAANS 728
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 254 HRY-HSEDEQGNLCYHYERKKPLSTHNACAPPHSSCQLCASSPECQYVNYIHAQPLH 87
H Y H + +QGNLC PL+ C H + C +C Y + + P H
Sbjct: 436 HFYLHGKCQQGNLCKFSHDTTPLTKSKPCT--HYARGSCLKGDDCPYDHELSKYPCH 490
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 218 CYHYERKKPLSTHNACAPPHSSCQLCAS 135
C H R P S H+ C PPH Q C S
Sbjct: 355 CCHDARHGP-SCHHGCCPPHHGKQACTS 381
>02_05_0585 + 30155021-30155910,30156130-30157006
Length = 588
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 724 AFKRNGMQDQEHSKLLGATNFLVRCPRDVSIECDVCARPVKVGDPAKVPPCTS 566
A+KR + ++H G L+RC + +PV++ P K+PP TS
Sbjct: 518 AYKRGATEIKQHPFFEGVNWALIRCASPPEVP-----KPVEIERPPKLPPSTS 565
>08_02_0154 -
13324384-13325351,13326306-13326502,13326695-13327274,
13328324-13328446,13328803-13329130
Length = 731
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 191 EVSFFRNDNKGYPVHPQNGN--DEPRRRDQLDKKFLRRAYDAHGLPLPPRRRASLEPLAD 364
E + N+N GY HPQ G ++P Q +K + +D LP R R +P D
Sbjct: 122 EAMYMGNNNNGY--HPQGGQGWNQPCPYYQGEKTVPQEYWDTRLLPFSERSR---KPSVD 176
Query: 365 REFKTF 382
+F F
Sbjct: 177 EQFARF 182
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Frame = +2
Query: 155 KSEEVRKHCESTEVSFFRNDNKGYPVHP-----QNGNDEPRR--------RDQLDKKFLR 295
K E+ ++C+ E S R+D++GY H ++G+D+ RR RD+ D +
Sbjct: 475 KHEDYNRYCKPGERSSSRHDDRGYSKHESRSKYRDGDDDYRRQSGGSRYGRDKCDGERRY 534
Query: 296 RAYDAHG 316
R D HG
Sbjct: 535 RGDDDHG 541
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -3
Query: 266 YDEVHRYHSEDEQGNLC-YHYERKKPLSTHNACAPPHSS----CQLCASSPECQYVN 111
YD Y + G + Y+Y + +ST+N C P C+L + S E +YV+
Sbjct: 976 YDRKTGYFQVTDLGRIASYYYVSHRTISTYNECLKPTMGDIELCRLFSLSEEFKYVS 1032
>10_08_0674 + 19788198-19789817
Length = 539
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 510 PSDTSIGFFRSKQQPRPGLEVQGGTF--AGSPTLTGLA 617
P T G R +PR G + G F G+P GLA
Sbjct: 415 PQTTGCGVLRGSARPRDGAHINLGAFYGVGTPVAVGLA 452
>02_01_0502 -
3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 727 TAFKRNGMQDQEHSKLLGATNFLVRCPRDVSIECD 623
T+ N + +E+S L +F++RCPRD+S C+
Sbjct: 290 TSASENDEELREYS-LQALESFMLRCPRDISPYCE 323
>11_06_0154 + 20707811-20708210,20709252-20709523
Length = 223
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 117 VLTFWT*GAELTRRVRRCASIVSRQRFLSFVMITKVTLFILRMVTMNLVVGISSI 281
V FW TRR R+ AS +RQ ++ + + F+L+ +N VG ++
Sbjct: 117 VFVFWKSATMTTRRDRQEASASNRQFLITPFRLLCIHSFVLQPSELNFEVGYINV 171
>05_05_0290 - 23879064-23880035
Length = 323
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 634 IECDVCARPVKVGDPAKVPPCTSKPGLGCCL 542
+ C VC ++VG AK PC K C L
Sbjct: 197 VSCSVCLDDLEVGSQAKQMPCEHKFHSSCIL 227
>09_03_0032 +
11742279-11742398,11743318-11743359,11743394-11743555,
11743768-11743888,11744104-11744195,11744271-11744371,
11744592-11744949
Length = 331
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 587 RRVAHFDGPRAHV-AFNGNVPGTTYKEI 667
+R A DG R V AF+ NVPGTT K+I
Sbjct: 250 QRQAIVDGLRDSVLAFSENVPGTTAKDI 277
>01_06_1473 -
37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 483 RTFHSSNISPSDTSIGFFRSKQQPRP 560
RT HSS+ SD G R ++QPRP
Sbjct: 98 RTIHSSSDEGSDGEDGAPRKRKQPRP 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,430,894
Number of Sequences: 37544
Number of extensions: 445758
Number of successful extensions: 1362
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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