Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12a01
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine recept...    29   4.8  
U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine recept...    29   4.8  
U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine recept...    29   4.8  
AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.      29   4.8  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    28   6.3  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 584 FRRVAHFDGPRA-HVAFNGNVPGTTYKEISGSQQLRMLLILHSVPLERC 727
           F+ +A F G RA   A NG V    Y+++ G++   ++L+  ++  E+C
Sbjct: 133 FKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEKC 181


>Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical
           protein F09F3.5 protein.
          Length = 718

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 146 ADTKSEEVRKHCESTEVSFFRNDNKGYPVHPQNGND 253
           AD ++E VR   E   ++F   D+ GY + PQN ND
Sbjct: 323 ADCEAETVRSFQEGKMLTF---DDLGYTLPPQNAND 355


>Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical
           protein T21B6.2 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
 Frame = +2

Query: 212 DNKGYPVHPQNGNDEPRRRDQLDK----------KFLRRAYDAHGLPLPPRRRASLEPL- 358
           +N  YP  P N    PR  +QL            KFLRR Y    LP+  R++ S+    
Sbjct: 34  ENLPYPSDPHNETFWPRGWNQLTNVGIDQATKLGKFLRRRYQGSVLPVFDRKKISIRSSD 93

Query: 359 ADREFKT 379
           ADR  +T
Sbjct: 94  ADRAIET 100


>U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformc protein.
          Length = 590

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 393 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 572
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 225 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 281

Query: 573 QGGTFAGS-PTLT 608
                 GS P LT
Sbjct: 282 PAIPECGSMPNLT 294


>U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformb protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 393 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 572
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 242 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 298

Query: 573 QGGTFAGS-PTLT 608
                 GS P LT
Sbjct: 299 PAIPECGSMPNLT 311


>U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine receptor
           protein 3, isoforma protein.
          Length = 605

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 393 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 572
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 240 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 296

Query: 573 QGGTFAGS-PTLT 608
                 GS P LT
Sbjct: 297 PAIPECGSMPNLT 309


>AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 393 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 572
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 242 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 298

Query: 573 QGGTFAGS-PTLT 608
                 GS P LT
Sbjct: 299 PAIPECGSMPNLT 311


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -1

Query: 250 VTILRMNRVTFVIITKERNLCRLTMLAHLLTLRVSSAPQV---QNVNTSTIFTH 98
           +T+LR+ R++  +++ ER LC  + L     L  ++A  +   Q V TST  ++
Sbjct: 223 ITVLRLTRMSKRLVSSERTLCIASFLISSCFLGTAAAESLFAFQVVRTSTSISY 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,493,431
Number of Sequences: 27780
Number of extensions: 391003
Number of successful extensions: 1249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)