Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p23
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.58 
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    28   1.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    28   1.8  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   2.4  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    27   3.1  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    27   3.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   4.1  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   4.1  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    27   4.1  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   5.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.5  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 583 NNLKSNEIETGESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKINTENEFSK 425
           NN+ ++  +T  +  KRT  +T+  K     F  TT++  +N K +T NE +K
Sbjct: 799 NNIPNDTTKTNGNATKRTLEQTEDAKPFAFSFGSTTEQ--ANKKASTSNETTK 849


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 754 GKINQSLNTVPNMSIQFGHVTEKIPDI 674
           G  +QSL+T+PN  I  G   E +P +
Sbjct: 70  GDSSQSLSTLPNNDISVGEYVEPLPSV 96


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/79 (30%), Positives = 36/79 (45%)
 Frame = -2

Query: 745 NQSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPINLNIYKVNNLKSN 566
           + +LNT PN S      + KIP  VP    H    N  +  +T      NI +V++ K  
Sbjct: 52  SNALNTTPNESTSQIDSSPKIPSAVP----HISTPNPSSGASTP-----NIKRVSDFKFG 102

Query: 565 EIETGESLFKRTQTKTQHN 509
           EI  GE  +    T T+++
Sbjct: 103 EI-LGEGSYSTVLTATENS 120


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = -2

Query: 715  SIQFGHVTEKIPDIVPI-DNKHSKASNCDNEKATNIPINLNIYKVNNLKSNEIETGESLF 539
            SI   H T  +   VPI D  ++  +    + A N  ++L     + +K  ++ET ES  
Sbjct: 842  SINLKHSTRPV---VPIADGIYASTTLHPIDNAKNRLVSLLRRPKHKVKHAKVETRESPM 898

Query: 538  KRTQTKTQHNKNVISEFIETTDR 470
            K   TK QH K   S F   T +
Sbjct: 899  KNKPTKKQH-KRAFSMFERPTSQ 920


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 101 SKVSTKEYLRQYRVIRLVLCVWVALSGYKGRFARTSVYSFQIVAIFF 241
           SK+S    L  Y  +  V   W A  G K +  R   + F++ A+ F
Sbjct: 275 SKISRISRLPNYLTVNFVRFYWKASIGKKAKILRKVKFPFELDAVEF 321


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 667 IDNKHSKASNCDNEKATNIPINLNIYKV----NNLKSNEIET-GESLFKRTQTKTQHN 509
           I+  HSKAS C  +   NI I+ N+  +    N    N IE   E +F+  Q + Q N
Sbjct: 31  IEKNHSKASMCTGQSPLNI-ISYNVPPLIVLRNKTIRNSIEVLVEEMFRDIQMRQQTN 87


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
 Frame = -2

Query: 559 ETGESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKINT------------ENEFSKTGD 416
           ETG +  KR+  + +  K+     +ETT R TS  + NT            +  FS T +
Sbjct: 6   ETGNNRLKRSNNRGKSKKDWKDASVETTPRETSVDEDNTSVFEDVEAQDSRQKRFSSTLE 65

Query: 415 INKYDRIETVNSKMR 371
            N+++ + ++  K R
Sbjct: 66  GNRFEELRSLREKER 80


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = -2

Query: 670 PIDNKHSKASNCDNEKATNIPINLNIYKVNNLKSNEIETGESLFKRTQTKTQHNKNVI-- 497
           P D+K  + SN D +   +    L I + N +K     T  S+    Q   +  K  I  
Sbjct: 724 PTDDKGEQVSNADVDSGLSKTERLTIQQTNEIKHVPTNTTSSVKLPQQPSNEDEKERITT 783

Query: 496 SEFIETTDRCTSNVKINTENEFSKTGDIN 410
           +++ ++T       +    NE  + G  N
Sbjct: 784 ADYADSTSLERLESQEPNRNELVQVGSSN 812


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = -2

Query: 679 DIVPIDNKHSKASNCDNEKATN-IPIN--LNIYKVNNLKSNEIETGESLFKRTQTKTQHN 509
           DI+    K +   N   EK +N  P N  L++ K N++ +NE +   +  +RT+T++  +
Sbjct: 269 DILKSITKQTYYENYRTEKLSNDSPSNTSLSLQKQNSIVANEDKRSVNGSERTETRSSID 328

Query: 508 KNVISEFIETTDRCTSNVKINT 443
           ++ +   +  + +     KIN+
Sbjct: 329 QSEMRTNVSDSTKSEELKKINS 350


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 793 FILNTTNNISNCFGKINQSLNTVPNMSIQFGHVTEK 686
           ++LN    + N F  +   +N    +S   GHV EK
Sbjct: 453 YVLNIEQALENFFRTVRALMNETEGVSANGGHVPEK 488


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -2

Query: 571 SNEIETGESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKINTENEFSKTGDINKYDRIE 392
           S EIE  +  F  T T  Q+N    SE   +    T +  ++ E + ++ G      +  
Sbjct: 642 STEIEGIKESFASTDTGLQNNSTATSENKRSESELTMSNVLSNEGDRNEEGSEINSSQPS 701

Query: 391 TVN 383
           T+N
Sbjct: 702 TIN 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,969
Number of Sequences: 5004
Number of extensions: 50271
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)