Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p23
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 32 0.61
02_02_0271 + 8445823-8445994,8446206-8446468,8446583-8447053,844... 30 1.9
02_05_0625 + 30453521-30453890,30454215-30454352,30454458-304547... 30 2.5
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101... 29 3.3
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897... 29 3.3
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601... 29 3.3
01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545... 29 3.3
03_02_0244 + 6750973-6751041,6751216-6751258,6751349-6751410,675... 29 4.3
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 29 4.3
02_05_1282 + 35442730-35442841,35443040-35443105,35443195-354432... 29 5.7
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183... 28 7.6
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 28 7.6
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899... 28 10.0
02_01_0415 + 3037720-3039849 28 10.0
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 31.9 bits (69), Expect = 0.61
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = -2
Query: 589 KVNNLKSNEIETGESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKINTE-NEFSKTGDI 413
KVN +NE+E G +F + + ++ S F E +D N + N F T +
Sbjct: 504 KVNRSIANEVEAG--VFTQLRVLRSRGDSICS-FGEGSDEEQQETSNNKKTNGFDNTAAV 560
Query: 412 NKYDRIETVNSKMRNEXXXXXXXXXKYPDSDLKVYKIYYSKNYNTKGSSSTTDLNFNK 239
+ D +++ + M + + +D+ +YS GSSS++D++F+K
Sbjct: 561 SM-DTLKSGDDSMNSVVVEPIKERVESSKTDVDTAAPFYSFVKRLSGSSSSSDVDFDK 617
>02_02_0271 +
8445823-8445994,8446206-8446468,8446583-8447053,
8447145-8447570
Length = 443
Score = 30.3 bits (65), Expect = 1.9
Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Frame = -2
Query: 802 KEYFILNTTNNISNCFGKINQSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEK 623
KE+ + N + +G S+ + +I G TE + + + I+ +K N++
Sbjct: 145 KEFLLAGNNNRVQQVYGS---SIEQHSSQNIFNGFGTELLSEALGINTVAAKRLQSQNDQ 201
Query: 622 ATNIP-INLNIYKVNNLKSNEIETGESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKIN 446
I + + + + + E ++ ++ Q Q + +E + CT ++N
Sbjct: 202 RGEIVHVKNGLQLLKPTLTQQQEQAQAQYQEVQYSEQQQTSSRWNGLEE-NFCTIKARVN 260
Query: 445 TENEFSKTGDIN-KYDRIETVNSK 377
EN S+ N + RI +VNS+
Sbjct: 261 IENP-SRADSYNPRAGRISSVNSQ 283
>02_05_0625 +
30453521-30453890,30454215-30454352,30454458-30454727,
30454844-30454983,30455067-30455213,30455319-30456008
Length = 584
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 116 KEYLRQYRVIRLVLCVWVALSGYK-GRFARTSVYSFQIVAI 235
K Y +RV L C +V +SGY G+F T++ F ++AI
Sbjct: 183 KPYEYGFRVFLLTFC-YVTVSGYNTGKFIATAISRFLLIAI 222
>07_01_0139 -
1014952-1015165,1015271-1015350,1015420-1015629,
1015925-1016044,1016650-1016709,1017129-1017204,
1018189-1018352,1018428-1018490,1018815-1018902,
1018997-1019647,1019965-1020449
Length = 736
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = -2
Query: 685 IPDIVPIDNKHSKASNCDNEKATNIPINLNIYKVNNLKSNEIETGESLFKRTQTKTQHNK 506
+P P+++ S+ + E+AT + + V N N ++ KRT T + H K
Sbjct: 140 LPSPKPVESDTSEP-DVGGERATRVTSQI----VQNFPDNNNNLPDNSSKRTTTSSHHRK 194
Query: 505 NVISEFIETTDRCTSNVKIN 446
+F + + T+N ++N
Sbjct: 195 VFREKFQDKSSTETANFRLN 214
>06_01_1093 -
8970996-8971667,8971756-8971902,8971982-8972118,
8972343-8972612,8972731-8972868,8974965-8975394
Length = 597
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 116 KEYLRQYRVIRLVLCVWVALSGYK-GRFARTSVYSFQIVAI 235
K Y +RV L C +V +SGY G+F T+V F ++AI
Sbjct: 203 KAYEYGFRVFLLTFC-YVMVSGYNTGKFTDTAVSRFILIAI 242
>01_05_0013 -
17156017-17157647,17157977-17158144,17160064-17160113,
17160796-17160833,17161102-17161212
Length = 665
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 709 QFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPIN 602
++GH+ E++ D PID + + ++C E + I+
Sbjct: 379 KYGHIVEQLSDYAPIDFTNDRRTHCFPEAVVGLRIH 414
>01_03_0243 +
14154122-14154190,14154373-14154415,14154491-14154552,
14155214-14155310,14157663-14157733,14158338-14158694
Length = 232
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -2
Query: 505 NVISEFIETTDRCTSNV-KINTENEFSKTGDINKYDRIET 389
+++ F+ET DRC NV +++ F+K G+ K+++ T
Sbjct: 87 DLVQVFVETLDRCFKNVCELHIVFNFNKAGETVKHNQPHT 126
>03_02_0244 +
6750973-6751041,6751216-6751258,6751349-6751410,
6751779-6751875,6752380-6752450,6752503-6752586,
6753040-6753294
Length = 226
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -2
Query: 505 NVISEFIETTDRCTSNV-KINTENEFSKTGDINKYDRIETV 386
+++ F+ET DRC NV +++ F+K G + +Y R++ +
Sbjct: 87 DLVQVFVETLDRCFKNVCELDIVFNFNKAG-LEEYKRVKFI 126
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 697 VTEKIPDIVPIDNKHSKASNCDNEKATNIPINLNI 593
V + P +VP +N H K SN + K +N P++ +
Sbjct: 292 VLDTKPTVVPHENGHDKLSNNNLHKLSNTPLHTRL 326
>02_05_1282 +
35442730-35442841,35443040-35443105,35443195-35443282,
35443393-35443474,35443589-35443740,35443866-35443990,
35444309-35444367
Length = 227
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 425 FRKFIFCIYL--YVGRATVCCLNKFANNVLVVLGFC 526
F IFC+ + ++ + CC+ FA +V+++ G C
Sbjct: 174 FSSLIFCVEVPDFMALSCCCCVFLFAEDVIIMFGEC 209
>03_05_0815 +
27917516-27917767,27918024-27918110,27918281-27918394,
27919644-27919835,27919925-27921677,27921771-27922708,
27923587-27923859
Length = 1202
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/96 (20%), Positives = 43/96 (44%)
Frame = -2
Query: 733 NTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPINLNIYKVNNLKSNEIET 554
N P+++++ GH T+++ VPI + S + K+ I + KV E T
Sbjct: 509 NDFPDITVESGHGTQQLTAFVPIIPEVSSSIKHKEPKSVVIDQTEPVPKVCTATVVEHNT 568
Query: 553 GESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKIN 446
E++ K T ++H + ++ + N +++
Sbjct: 569 AENI-KMKSTTSKHVQEEAGASMDYDTEASYNAEVS 603
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = -2
Query: 331 PDSDLKVYKIYYSKNYNTKGSSSTTDLNFNKKDSDDLKTIYR 206
P + + + ++N + + SSST++ + +++D DD +T YR
Sbjct: 871 PTKESEYQQKLQTRNEDGRRSSSTSEKSLDQEDEDDRETKYR 912
>08_01_0913 +
8995491-8995926,8995976-8997352,8997431-8998174,
8998402-8998748
Length = 967
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 347 FIQFSFFVPHFGINCFNAIIFVYVSRFRKFIFCI 448
F + S VP+ GI C I+ + V R IFCI
Sbjct: 582 FNKLSGPVPNIGIFCNATIVSISVHRLHVLIFCI 615
>02_01_0415 + 3037720-3039849
Length = 709
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 580 NLKSNEIETGESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKINTENEFSKTGDINK 407
N S I KR Q +N N+ E + CT+ + IN EN G+++K
Sbjct: 275 NRFSGTIPDSIGKLKRLQEFHMNNNNISGELPSSLGDCTNVITINLENN-KLAGELSK 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,403
Number of Sequences: 37544
Number of extensions: 243745
Number of successful extensions: 573
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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