Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p23
(803 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-2322|AAN09382.3| 16223|Drosophila melanogaster CG32580-... 31 1.8
BT011008-1|AAR27879.1| 706|Drosophila melanogaster AT12204p pro... 30 4.3
AE014298-1732|AAF48124.1| 706|Drosophila melanogaster CG18130-P... 30 4.3
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 29 7.4
AY069233-1|AAL39378.1| 322|Drosophila melanogaster GH27912p pro... 29 7.4
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 29 7.4
AE014296-1283|AAN12041.1| 824|Drosophila melanogaster CG8532-PD... 29 7.4
AE014296-1282|AAF50542.2| 824|Drosophila melanogaster CG8532-PB... 29 7.4
AE014296-1281|AAS65058.1| 831|Drosophila melanogaster CG8532-PE... 29 7.4
AE014296-1280|AAF50543.3| 831|Drosophila melanogaster CG8532-PA... 29 7.4
>AE014298-2322|AAN09382.3| 16223|Drosophila melanogaster CG32580-PA
protein.
Length = 16223
Score = 31.1 bits (67), Expect = 1.8
Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 4/204 (1%)
Frame = -2
Query: 784 NTTNNISNCFGKINQSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNI-P 608
+T+NN+S N +++T P + + + +K +K N + TNI
Sbjct: 15747 STSNNLSVHSNIDNSTISTQPYFDTDTTKYSTSVGVLSEASSKLTK-QNITEKSTTNILS 15805
Query: 607 INLNIYKVNNLKSNEIETGESLFKRTQTKTQHNKNVISEFIETTDRCTSNVKINTENEFS 428
+ NI L T ++ QT T+H TT S + + FS
Sbjct: 15806 LPSNIATSTTLTQPHFYTDKTETTGNQTSTEHTSK-----YSTTVEFLSKEQTSIIPTFS 15860
Query: 427 KTGDINKYDRIETVNSKMRNEXXXXXXXXXKYPDSDLKVYKIYYSKNYNTKGSSSTTDLN 248
K + S E Y DS L I ++N SS TD+N
Sbjct: 15861 KLEPTEHISNNKKFTSNGTTEYVISQSNNKTYSDSQL----ISTTENLILTASSQPTDVN 15916
Query: 247 FNK---KDSDDLKTIYRCPSEPSL 185
K K DDL+ Y SL
Sbjct: 15917 VWKEIDKRLDDLQNKYTIRDNNSL 15940
>BT011008-1|AAR27879.1| 706|Drosophila melanogaster AT12204p
protein.
Length = 706
Score = 29.9 bits (64), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 760 CFGKINQSLNTVPNMSIQFGHVTEK 686
CF KI++S+ TVPN+ + + H K
Sbjct: 247 CFWKIDESIGTVPNVLMAYAHELTK 271
>AE014298-1732|AAF48124.1| 706|Drosophila melanogaster CG18130-PA
protein.
Length = 706
Score = 29.9 bits (64), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 760 CFGKINQSLNTVPNMSIQFGHVTEK 686
CF KI++S+ TVPN+ + + H K
Sbjct: 247 CFWKIDESIGTVPNVLMAYAHELTK 271
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -2
Query: 328 DSDLKVYKIYYSKNYNTKGSSSTTDLNFNKKDSDDLKTIYR 206
+S LK+Y IY++ N +K S+ DL++ D + LK++YR
Sbjct: 107 NSSLKIYSIYFAGN-TSKCIPSSCDLSW---DHNHLKSLYR 143
>AY069233-1|AAL39378.1| 322|Drosophila melanogaster GH27912p
protein.
Length = 322
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 742 QSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPINLN 596
Q L+ + N I H+ + P++ +N + +S+ + +NIP N+N
Sbjct: 142 QLLSALSNPIIPIAHIPQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMN 190
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -2
Query: 328 DSDLKVYKIYYSKNYNTKGSSSTTDLNFNKKDSDDLKTIYR 206
+S LK+Y IY++ N +K S+ DL++ D + LK++YR
Sbjct: 55 NSSLKIYSIYFAGN-TSKCIPSSCDLSW---DHNHLKSLYR 91
>AE014296-1283|AAN12041.1| 824|Drosophila melanogaster CG8532-PD,
isoform D protein.
Length = 824
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 742 QSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPINLN 596
Q L+ + N I H+ + P++ +N + +S+ + +NIP N+N
Sbjct: 644 QLLSALSNPIIPIAHIPQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMN 692
>AE014296-1282|AAF50542.2| 824|Drosophila melanogaster CG8532-PB,
isoform B protein.
Length = 824
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 742 QSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPINLN 596
Q L+ + N I H+ + P++ +N + +S+ + +NIP N+N
Sbjct: 644 QLLSALSNPIIPIAHIPQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMN 692
>AE014296-1281|AAS65058.1| 831|Drosophila melanogaster CG8532-PE,
isoform E protein.
Length = 831
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 742 QSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPINLN 596
Q L+ + N I H+ + P++ +N + +S+ + +NIP N+N
Sbjct: 651 QLLSALSNPIIPIAHIPQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMN 699
>AE014296-1280|AAF50543.3| 831|Drosophila melanogaster CG8532-PA,
isoform A protein.
Length = 831
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 742 QSLNTVPNMSIQFGHVTEKIPDIVPIDNKHSKASNCDNEKATNIPINLN 596
Q L+ + N I H+ + P++ +N + +S+ + +NIP N+N
Sbjct: 651 QLLSALSNPIIPIAHIPQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMN 699
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,915,795
Number of Sequences: 53049
Number of extensions: 474920
Number of successful extensions: 1443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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