Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p17
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 2.1
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 27 2.1
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 26 3.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 4.8
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 26 4.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 6.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.5
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 8.5
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 18 NITR*VLERHPQTIHDKHEIRGQKHYNEDKTEQNA--SSHQTVIVDEETERAKES 176
N+ R + PQ + ++ + GQ EDK E +A H++ + E+ E + E+
Sbjct: 5 NVIRSHHDVEPQNVEEEPPLTGQTIVTEDKLETSAKDKKHESPSMSEDEEGSVEN 59
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +1
Query: 265 RSKTLTEHNKMDAMPRTIWTVVSDDVLKFESTFSMSQNPDVW--FT-----FGAKVKPTM 423
+++ +T HN + R I V + +LK + MS + FT +GA + T+
Sbjct: 290 QNQRITSHNVLSDEERQISVQVQNLILKLAKDYDMSPEDFLMDDFTLSLTQYGAFYRGTL 349
Query: 424 KENAAIITVPA--LKKQQKQQLITVGSLSMN 510
+A + +P+ L + Q + SLSMN
Sbjct: 350 PLSAQPLELPSQQLLRSQSNAALRSNSLSMN 380
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 3.7
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 325 VVSDDVLKFESTFSMSQNPDVWFTFGAKVKPTMKENAA-IITVPALKKQQKQQLITVGSL 501
V+ LK ++ ++++ N WFT+G ++ +I V L + + +L
Sbjct: 429 VIRKGYLKVDALYTINPNEPYWFTYGINLRAFASYICGLLINVVGLAGAVGDK-VPKAAL 487
Query: 502 SMNFILNDD*ILGIFFAFTLKYLII 576
+MN I +LGI +F L +LII
Sbjct: 488 TMNNIAY---LLGIVTSF-LSHLII 508
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +1
Query: 229 SISTGKLQQAPNRSKTLTEHNKMDAMPRTIW----TVVSDDVLKFESTFSMSQNPDVWFT 396
S+ +G +R+ ++T + ++ I T+ + L + S Q PD W T
Sbjct: 148 SVFSGNEASPSSRAPSITPVDSVNTTTSAIQVPSVTLTAPAPLGVDQKISQDQKPDSWLT 207
Query: 397 FGAKVKPTMKENAAIITVPALKKQQKQQ 480
+ A+ + A I P QQ
Sbjct: 208 YNAQFAQNSPQLAPSIPSPMKLSPANQQ 235
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 105 KTEQNASSHQTVIVDEETERAKESKEQDN 191
KTE S+HQ + EE++ A ES Q +
Sbjct: 142 KTEHADSNHQPAVSIEESKEAVESTSQSS 170
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 244 KLQQAPNRSKTLTEHNKMDAMPRTIWTVVSDDVLKFE 354
K QQA + + + D +P+T+W V+D L FE
Sbjct: 409 KEQQAEAKCRIDFFNQYGDYLPQTLWGAVTDPPLHFE 445
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 39 ERHPQTIHDKHEIRGQKHYNEDKTEQNA-SSHQTVIVD 149
+ H + DK +G K + ++ EQN SSH+ ++++
Sbjct: 407 KEHHKGPKDKEHHQGPKEKHNERPEQNMQSSHELLVIE 444
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 406 KVKPTMKENAAIITVPALKKQQKQQL 483
+VK +EN+ +I+ ++ KQQK++L
Sbjct: 1035 RVKKLERENSTLISDVSILKQQKEEL 1060
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 66 KHEIRGQ-KHYNEDKTEQNASSHQTVIVDEETERAKESKEQDN 191
K E GQ + YN+D E I +EE E +E +++++
Sbjct: 313 KQEGAGQYRGYNKDLEENEEDDLGDFIAEEEEEEEQEEEQEED 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,259
Number of Sequences: 5004
Number of extensions: 44636
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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