Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p17
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79856-1|CAA56236.1| 163|Homo sapiens troponin T protein. 34 0.33
X79855-1|CAA56235.1| 108|Homo sapiens troponin T protein. 34 0.33
EF179183-1|ABN05286.1| 295|Homo sapiens troponin T type 2 (card... 34 0.33
D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein. 33 0.77
CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein. 33 0.77
BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated pr... 33 0.77
BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated pr... 33 0.77
BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated pr... 33 0.77
AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein. 33 0.77
X79857-1|CAA56237.1| 255|Homo sapiens troponin T protein. 32 1.8
BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein. 32 1.8
BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein. 32 1.8
BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein. 32 1.8
AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated tra... 32 1.8
AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated tr... 32 1.8
AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens ... 32 1.8
AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 32 1.8
AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated tr... 32 1.8
AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated tr... 32 1.8
AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated pro... 30 7.1
AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated pro... 30 7.1
AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein. 30 7.1
AK074473-1|BAB85091.1| 178|Homo sapiens protein ( Homo sapiens ... 29 9.4
>X79856-1|CAA56236.1| 163|Homo sapiens troponin T protein.
Length = 163
Score = 34.3 bits (75), Expect = 0.33
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 33 VLERHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETE--RAKESKEQDNCAAVD 206
V+E + + ++ + ++ + ED+ EQ ++ + + ETE RA+E +E++ +
Sbjct: 7 VVEEYEEEEQEEAAVEEEEDWREDEDEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAE 66
Query: 207 DSP 215
D P
Sbjct: 67 DGP 69
>X79855-1|CAA56235.1| 108|Homo sapiens troponin T protein.
Length = 108
Score = 34.3 bits (75), Expect = 0.33
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 33 VLERHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETE--RAKESKEQDNCAAVD 206
V+E + + ++ + ++ + ED+ EQ ++ + + ETE RA+E +E++ +
Sbjct: 7 VVEEYEEEEQEEAAVEEEEDWREDEDEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAE 66
Query: 207 DSP 215
D P
Sbjct: 67 DGP 69
>EF179183-1|ABN05286.1| 295|Homo sapiens troponin T type 2
(cardiac) protein.
Length = 295
Score = 34.3 bits (75), Expect = 0.33
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 33 VLERHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETE--RAKESKEQDNCAAVD 206
V+E + + ++ + ++ + ED+ EQ ++ + + ETE RA+E +E++ +
Sbjct: 7 VVEEYEEEEQEEAAVEEEEDWREDEDEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAE 66
Query: 207 DSP 215
D P
Sbjct: 67 DGP 69
>D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein.
Length = 254
Score = 33.1 bits (72), Expect = 0.77
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 524 SFKMKFMDKLPTVISCCFCCFLRAGTVMIAAFSFIVGLTFA 402
SFK D+ + CC CC +R GT+++ + +V L A
Sbjct: 26 SFKRNRSDRFYST-RCCGCCHVRTGTIILGTWYMVVNLLMA 65
>CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.77
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 524 SFKMKFMDKLPTVISCCFCCFLRAGTVMIAAFSFIVGLTFA 402
SFK D+ + CC CC +R GT+++ + +V L A
Sbjct: 5 SFKRNRSDRFYST-RCCGCCHVRTGTIILGTWYMVVNLLMA 44
>BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.77
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 524 SFKMKFMDKLPTVISCCFCCFLRAGTVMIAAFSFIVGLTFA 402
SFK D+ + CC CC +R GT+++ + +V L A
Sbjct: 5 SFKRNRSDRFYST-RCCGCCHVRTGTIILGTWYMVVNLLMA 44
>BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.77
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 524 SFKMKFMDKLPTVISCCFCCFLRAGTVMIAAFSFIVGLTFA 402
SFK D+ + CC CC +R GT+++ + +V L A
Sbjct: 5 SFKRNRSDRFYST-RCCGCCHVRTGTIILGTWYMVVNLLMA 44
>BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.77
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 524 SFKMKFMDKLPTVISCCFCCFLRAGTVMIAAFSFIVGLTFA 402
SFK D+ + CC CC +R GT+++ + +V L A
Sbjct: 5 SFKRNRSDRFYST-RCCGCCHVRTGTIILGTWYMVVNLLMA 44
>AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein.
Length = 215
Score = 33.1 bits (72), Expect = 0.77
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 524 SFKMKFMDKLPTVISCCFCCFLRAGTVMIAAFSFIVGLTFA 402
SFK D+ + CC CC +R GT+++ + +V L A
Sbjct: 5 SFKRNRSDRFYST-RCCGCCHVRTGTIILGTWYMVVNLLMA 44
>X79857-1|CAA56237.1| 255|Homo sapiens troponin T protein.
Length = 255
Score = 31.9 bits (69), Expect = 1.8
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 33 VLERHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAK-ESKEQDNCAAVDD 209
V+E + + ++ + ++ + ED+ EQ ++ + + ETE + E +E++ +D
Sbjct: 7 VVEEYEEEEQEEAAVEEEEDWREDEDEQEEAAEEDAEAEAETEETRAEDEEEEEAKEAED 66
Query: 210 SP 215
P
Sbjct: 67 GP 68
>BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein.
Length = 317
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 105 SCCLCCHVRTGTILLGVWYLII 126
>BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated
transmembrane protein 4 beta protein.
Length = 370
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 158 SCCLCCHVRTGTILLGVWYLII 179
>AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta, variant 1 protein.
Length = 317
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 105 SCCLCCHVRTGTILLGVWYLII 126
>AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens
cDNA PSEC0001 fis, clone NT2RM1000066, moderately
similar to Lysosomal-associated transmembrane protein 4
beta. ).
Length = 226
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane
transporter protein protein.
Length = 283
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 71 SCCLCCHVRTGTILLGVWYLII 92
>AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta variant 2 protein.
Length = 317
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 105 SCCLCCHVRTGTILLGVWYLII 126
>AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated
transmembrane protein 4 beta protein.
Length = 226
Score = 31.9 bits (69), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAFSFIV 417
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 29.9 bits (64), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAF 429
SCC CC +R GT+++ +
Sbjct: 105 SCCLCCHVRTGTILLGVW 122
>AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 29.9 bits (64), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAF 429
SCC CC +R GT+++ +
Sbjct: 105 SCCLCCHVRTGTILLGVW 122
>AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein.
Length = 124
Score = 29.9 bits (64), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 482 SCCFCCFLRAGTVMIAAF 429
SCC CC +R GT+++ +
Sbjct: 105 SCCLCCHVRTGTILLGVW 122
>AK074473-1|BAB85091.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ23893 fis, clone LNG14589. ).
Length = 178
Score = 29.5 bits (63), Expect = 9.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +2
Query: 284 STTKWTPCP------EPFGPSSPMMC*SSRAHSPCPRTRTFGSRLARKSNRR*KKMR 436
STT+WT CP G + P + + R+ PRTRT S R N + MR
Sbjct: 98 STTRWTSCPGLSARVTGAGITRPGLPTTDRSAQRAPRTRTTSSSSKRPGNIKETGMR 154
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,928,519
Number of Sequences: 237096
Number of extensions: 1576423
Number of successful extensions: 4599
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4590
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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