Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p16
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   4.0  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    27   4.0  
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc...    27   4.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   6.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.9  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   6.9  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   6.9  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   6.9  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 766 NLQQFVSRCKDIYLSMYNEKPALNE 692
           NL+++VS+ K++  S+Y++    NE
Sbjct: 95  NLEEYVSQIKEVKQSLYSDDSVFNE 119


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = -2

Query: 595 IDCKYLEVALSPLVSDMTEIGDYYRQLKALHLLLEKTPQE-----IAKSQSEGASLPYSM 431
           ++  +L+     LVS +     +    KA   LL++ P E     +  +  +G  LPY +
Sbjct: 258 LNAPWLDPFFGCLVSIVVFSAGFNSSKKAFLQLLDRAPSEELRIAVTDALLKGEKLPYKI 317

Query: 430 VMMFLFSHAGHQLLA 386
           V +   +HA H +++
Sbjct: 318 VTILGNAHAMHVIIS 332


>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
           Rec25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 328 RSEKERLDFVAGALQRYQNHIRQNQIASYDEVYPVLLQMLEDGRNSLR 185
           R  +E+ D V       QNH  QNQ     E+Y  LLQ ++   + LR
Sbjct: 40  REFQEQKDNVVEEKNTDQNHQNQNQEGVIIEIYQELLQKVDLISSELR 87


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 704 WFFVIHGQVNIFASRH 751
           WF  +H ++N+FA+ H
Sbjct: 302 WFITVHPKLNLFAAAH 317


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 428 HDVFIFPCRTSTPCTPYLC 372
           H +F+ P R+S+ C  Y+C
Sbjct: 171 HTIFVPPKRSSSSCVTYVC 189


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 742 CKDIYLSMYNEKPALNECYMNIARS-CIERFIYHICNVRP 626
           CK I+L    E+P L+ C+    R  C   F+   C  +P
Sbjct: 10  CKAIHLKAIIEEPKLSCCHCETCRIWCSSPFMAFSCTQKP 49


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 439 YSMVMMFLFSHAGHQLLAPHTCAGW-NIQKLMQWLDTHRSEKE 314
           +S+ +  +F +AG   LA      + + QK+ +W+ T +S+K+
Sbjct: 191 FSVTLTGIFPYAGMSFLAYDLATDFFHKQKIDEWVSTKKSDKK 233


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = -2

Query: 763 LQQFVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSK 617
           L+ FV +  D+ +  + +   LN+ Y  +A    + F++   + + L+K
Sbjct: 139 LENFVEKADDLAVVAFFKDQKLNDTYTEVAEVMKDDFVFAASDDKELAK 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,653
Number of Sequences: 5004
Number of extensions: 61722
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)