Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p16
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092...    29   3.1  
08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461     28   7.2  
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708...    28   7.2  
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675...    28   7.2  

>03_02_0971 -
           12807981-12808094,12808949-12809053,12809236-12809295,
           12809399-12809537,12809648-12809832,12809926-12810009,
           12810093-12810215,12810617-12810796,12811017-12811092,
           12811178-12811277,12811355-12811430,12812155-12812244,
           12812342-12812449,12813583-12813651,12813751-12813921,
           12814002-12814072,12814263-12814360,12814659-12814719,
           12814935-12814971,12815217-12815308,12815428-12815549,
           12816281-12816414
          Length = 764

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = -2

Query: 499 LLEKTPQEIAKSQSEGASLPYSM-------VMMFLFSHAGHQLLAPHTCAGWNIQKLMQW 341
           +LEK  +E A +++E   LP S        + +  F HA  Q+ A  +    N+ +L+QW
Sbjct: 686 ILEKEKKEKALAEAENRPLPQSFSSNDVRALRLSDFKHAHEQVCASVSSDSTNMNELIQW 745

Query: 340 LDTH 329
            D +
Sbjct: 746 NDLY 749


>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
          Length = 874

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 682 NIARSCIERFIYHICNVRPLS 620
           ++ARSC   F  H+ N+RPL+
Sbjct: 267 DVARSCCSSFSGHVYNIRPLN 287


>07_03_1647 + 28370226-28370369,28370452-28370611,28370704-28370831,
            28372512-28372628,28372729-28372782,28372985-28373075,
            28373517-28373688,28374452-28374573,28374726-28374817,
            28375331-28375373,28375596-28375656,28376367-28376515,
            28376659-28376729,28376805-28376975,28377056-28377124,
            28377427-28377528,28377629-28377697,28378060-28378138,
            28378238-28378337,28378438-28378513,28378715-28378894,
            28379430-28379552,28379634-28379717,28380068-28380252,
            28380339-28380477,28380585-28380644,28380926-28381030,
            28381332-28381445
          Length = 1019

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -2

Query: 499  LLEKTPQEIAKSQSEGASLP-------YSMVMMFLFSHAGHQLLAPHTCAGWNIQKLMQW 341
            +LE+  +E A +++E   LP          + M  F HA  Q+ A  T    N+ +L+QW
Sbjct: 941  ILEREKKERASAEAENKPLPPPRSSSDVRSLRMNDFKHAHEQVCASITSDSRNMTELIQW 1000

Query: 340  LDTH 329
             D +
Sbjct: 1001 NDLY 1004


>03_06_0222 + 32466379-32466741,32466849-32466948,32467443-32467547,
            32467627-32467789,32467995-32468115,32468625-32468705,
            32468813-32468911,32468955-32468986,32468987-32469137,
            32469477-32469563,32470290-32470409,32470514-32470645,
            32470743-32470840,32470919-32471042,32471126-32471233,
            32471822-32471957,32472751-32472861,32472963-32473026,
            32473133-32473205,32473762-32473938,32474012-32474122,
            32474189-32474449,32474811-32474981,32475073-32475228,
            32475590-32475823,32475936-32476103,32476316-32476425,
            32476513-32477041
          Length = 1394

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 150  FNYYLSFCYMEKHPTILMFPEVRINQSLV*FPSLTLRYEIHFVKS 16
            F+ Y+S  Y  + P+ + +  +R++ ++  FPSL + + I    S
Sbjct: 1020 FSLYISLYYEMESPSEITYRTLRMHYNIEVFPSLNVSFAIRMCSS 1064


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,004
Number of Sequences: 37544
Number of extensions: 347778
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)