Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p16
         (776 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF058718-1|AAC69276.1|  839|Homo sapiens putative 13 S Golgi tra...   126   1e-28
BC068540-1|AAH68540.1|  823|Homo sapiens COG5 protein protein.        100   7e-21
M13977-1|AAA60102.1|  317|Homo sapiens protein kinase C-gamma pr...    30   8.1  
BC047876-1|AAH47876.1|  697|Homo sapiens protein kinase C, gamma...    30   8.1  
AF345987-1|AAK13533.1|  697|Homo sapiens protein kinase C gamma ...    30   8.1  
AB209671-1|BAD92908.1|  239|Homo sapiens protein kinase C, gamma...    30   8.1  

>AF058718-1|AAC69276.1|  839|Homo sapiens putative 13 S Golgi
            transport complex 90kD subunit brain-specific isoform
            protein.
          Length = 839

 Score =  126 bits (303), Expect = 1e-28
 Identities = 61/195 (31%), Positives = 110/195 (56%)
 Frame = -2

Query: 769  KNLQQFVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQID 590
            K LQ F++R    Y   +     + +    IA+  +E FI H   +RPL + G+++L  D
Sbjct: 645  KELQGFIARVMSDYFKHFECLDFVFDNTEAIAQRAVELFIRHASLIRPLGEGGKMRLAAD 704

Query: 589  CKYLEVALSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAKSQSEGASLPYSMVMMFLFS 410
               +E+A+ P    ++++G  YR L++   LL +  + +A S + G  +P+S+++ FLF+
Sbjct: 705  FAQMELAVGPFCRRVSDLGKSYRMLRSFRPLLFQASEHVASSPALGDVIPFSIIIQFLFT 764

Query: 409  HAGHQLLAPHTCAGWNIQKLMQWLDTHRSEKERLDFVAGALQRYQNHIRQNQIASYDEVY 230
             A  +L +P   A W+  +  QWLD H SEK+RL  + GAL+ Y   +R  +   +  VY
Sbjct: 765  RAPAELKSPFQRAEWSHTRFSQWLDDHPSEKDRLLLIRGALEAYVQSVRSREGKEFAPVY 824

Query: 229  PVLLQMLEDGRNSLR 185
            P+++Q+L+   ++L+
Sbjct: 825  PIMVQLLQKAMSALQ 839


>BC068540-1|AAH68540.1|  823|Homo sapiens COG5 protein protein.
          Length = 823

 Score =  100 bits (239), Expect = 7e-21
 Identities = 50/154 (32%), Positives = 86/154 (55%)
 Frame = -2

Query: 769  KNLQQFVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQID 590
            K LQ F++R    Y   +     + +    IA+  +E FI H   +RPL + G+++L  D
Sbjct: 666  KELQGFIARVMSDYFKHFECLDFVFDNTEAIAQRAVELFIRHASLIRPLGEGGKMRLAAD 725

Query: 589  CKYLEVALSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAKSQSEGASLPYSMVMMFLFS 410
               +E+A+ P    ++++G  YR L++   LL +  + +A S + G  +P+S+++ FLF+
Sbjct: 726  FAQMELAVGPFCRRVSDLGKSYRMLRSFRPLLFQASEHVASSPALGDVIPFSIIIQFLFT 785

Query: 409  HAGHQLLAPHTCAGWNIQKLMQWLDTHRSEKERL 308
             A  +L +P   A W+  +  QWLD H SEK+RL
Sbjct: 786  RAPAELKSPFQRAEWSHTRFSQWLDDHPSEKDRL 819


>M13977-1|AAA60102.1|  317|Homo sapiens protein kinase C-gamma
           protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 754 FVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQI 593
           F   C  +   + ++    + C MN+ R C+ R +  +C V    + GR++L+I
Sbjct: 113 FCDHCGSLLYGLVHQGMKCSCCEMNVHRRCV-RSVPSLCGVDHTERRGRLQLEI 165


>BC047876-1|AAH47876.1|  697|Homo sapiens protein kinase C, gamma
           protein.
          Length = 697

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 754 FVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQI 593
           F   C  +   + ++    + C MN+ R C+ R +  +C V    + GR++L+I
Sbjct: 113 FCDHCGSLLYGLVHQGMKCSCCEMNVHRRCV-RSVPSLCGVDHTERRGRLQLEI 165


>AF345987-1|AAK13533.1|  697|Homo sapiens protein kinase C gamma
           protein.
          Length = 697

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 754 FVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQI 593
           F   C  +   + ++    + C MN+ R C+ R +  +C V    + GR++L+I
Sbjct: 113 FCDHCGSLLYGLVHQGMKCSCCEMNVHRRCV-RSVPSLCGVDHTERRGRLQLEI 165


>AB209671-1|BAD92908.1|  239|Homo sapiens protein kinase C, gamma
           variant protein.
          Length = 239

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 754 FVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQI 593
           F   C  +   + ++    + C MN+ R C+ R +  +C V    + GR++L+I
Sbjct: 123 FCDHCGSLLYGLVHQGMKCSCCEMNVHRRCV-RSVPSLCGVDHTERRGRLQLEI 175


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,432,267
Number of Sequences: 237096
Number of extensions: 1989079
Number of successful extensions: 3705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3705
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)