Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p16
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-8|AAB57721.2|  700|Caenorhabditis elegans Hypothetical ...    34   0.099
AL132943-8|CAB81985.3|  453|Caenorhabditis elegans Hypothetical ...    33   0.23 
AL132943-7|CAC14394.1|  589|Caenorhabditis elegans Hypothetical ...    33   0.23 
AF031834-1|AAC13670.1|  589|Caenorhabditis elegans GLY4 protein.       33   0.23 
AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical ...    29   2.8  
CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical ...    29   3.7  
AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical...    28   6.5  
U23524-6|AAC46820.1|  383|Caenorhabditis elegans Hypothetical pr...    28   8.6  
L15313-5|AAA28199.1|   99|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AF003145-8|AAB57721.2|  700|Caenorhabditis elegans Hypothetical
           protein B0414.8a protein.
          Length = 700

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = -2

Query: 679 IARSCIERFIYHICNVRPLSKFGRVKLQIDCKYLEVALSPLVSDMTEIGDYYRQLKALHL 500
           I +  ++ FI  I  ++  SKFG  ++Q+DC YL+  L+ LVSD   +     Q  AL  
Sbjct: 607 IVKVVLKIFIESI-RLQTYSKFGVEQVQVDCYYLQRCLAALVSDEVVVNSMVDQ--ALSS 663

Query: 499 LLEKTPQEIAKSQSEGASL 443
            L++    +    S  A L
Sbjct: 664 ALKRCQDPVLVHPSRLAQL 682


>AL132943-8|CAB81985.3|  453|Caenorhabditis elegans Hypothetical
           protein Y116F11B.12b protein.
          Length = 453

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = -2

Query: 745 RCKDIYLSMYNEKPA-LNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQIDCKYLEVA 569
           +C+D+  S    +P  +   Y N ARS + R ++ + N  P               LE+ 
Sbjct: 139 QCRDVDYSKVGMQPTTVIITYHNEARSSLLRTVFSVFNQSPEELL-----------LEIV 187

Query: 568 LSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAKSQSEGASLPYSMVMMFLFSH 407
           L    S   EIG    Q++ + +L     + + +S+ +GA +  + V+ FL SH
Sbjct: 188 LVDDNSQDVEIGKELAQIQRITVLRNNQREGLIRSRVKGAQVARAPVLTFLDSH 241


>AL132943-7|CAC14394.1|  589|Caenorhabditis elegans Hypothetical
           protein Y116F11B.12a protein.
          Length = 589

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = -2

Query: 745 RCKDIYLSMYNEKPA-LNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQIDCKYLEVA 569
           +C+D+  S    +P  +   Y N ARS + R ++ + N  P               LE+ 
Sbjct: 139 QCRDVDYSKVGMQPTTVIITYHNEARSSLLRTVFSVFNQSPEELL-----------LEIV 187

Query: 568 LSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAKSQSEGASLPYSMVMMFLFSH 407
           L    S   EIG    Q++ + +L     + + +S+ +GA +  + V+ FL SH
Sbjct: 188 LVDDNSQDVEIGKELAQIQRITVLRNNQREGLIRSRVKGAQVARAPVLTFLDSH 241


>AF031834-1|AAC13670.1|  589|Caenorhabditis elegans GLY4 protein.
          Length = 589

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = -2

Query: 745 RCKDIYLSMYNEKPA-LNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQIDCKYLEVA 569
           +C+D+  S    +P  +   Y N ARS + R ++ + N  P               LE+ 
Sbjct: 139 QCRDVDYSKVGMQPTTVIITYHNEARSSLLRTVFSVFNQSPEELL-----------LEIV 187

Query: 568 LSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAKSQSEGASLPYSMVMMFLFSH 407
           L    S   EIG    Q++ + +L     + + +S+ +GA +  + V+ FL SH
Sbjct: 188 LVDDNSQDVEIGKELAQIQRITVLRNNQREGLIRSRVKGAQVARAPVLTFLDSH 241


>AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical
           protein M01D1.2a protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 643 ICNVRPLSKFGR-VKLQIDCKYLEVALSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAK 467
           I ++   SKFGR   +Q   K L+     L SD+  +GD  +QL  ++  +EK   + A+
Sbjct: 452 IIDIGVRSKFGRSTTVQKRIKDLDTRNKDLSSDIGTLGDVVKQLTLMNEKMEKEADQRAE 511

Query: 466 SQSE 455
              E
Sbjct: 512 VNME 515


>AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical
           protein M01D1.2b protein.
          Length = 670

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 643 ICNVRPLSKFGR-VKLQIDCKYLEVALSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAK 467
           I ++   SKFGR   +Q   K L+     L SD+  +GD  +QL  ++  +EK   + A+
Sbjct: 452 IIDIGVRSKFGRSTTVQKRIKDLDTRNKDLSSDIGTLGDVVKQLTLMNEKMEKEADQRAE 511

Query: 466 SQSE 455
              E
Sbjct: 512 VNME 515


>CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical
           protein C50E10.8 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 448 SLPYSMVMMFLFSHAGHQLLAPHTCAGWNIQKL---MQWLDTHRSEKERLDFVAGA 290
           SL   +V+ +LFS AG  LL P+    W I+ +   + W     ++  RLD ++ A
Sbjct: 66  SLIAIVVLSWLFSAAGKLLLTPYFIGFWVIEPVTRGLPWWTCDVAKMARLDSISSA 121


>AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical
           protein Y38H6C.11 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = -2

Query: 640 CNVRPLSKFGRVKLQIDCKYLEV----ALSPLVSDMTEIGDYYRQLKALHLLLEKTPQEI 473
           CN        ++  + + +YLE     +LS  V D  +I D++++ K+L L  +K P+  
Sbjct: 171 CNESTSKWIQKLLSRFEMEYLEKITMKSLSGKVFDKLKITDHFKRAKSLDLHAKKNPRGY 230

Query: 472 AKSQSEGASLPYSMVMMFLFSHAGHQLLAPH 380
                +   + Y+M+     SH    +L  H
Sbjct: 231 TPGVDQTVVVDYAML-----SHVEKYMLTVH 256


>U23524-6|AAC46820.1|  383|Caenorhabditis elegans Hypothetical
           protein C29F5.1 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
 Frame = -2

Query: 607 VKLQIDCK-YLEVALSPLVSDMTEI------GDYYRQLKALHL--LLEKTPQEIAKSQSE 455
           V+ ++DC  Y  V  +P+  D +E+       D    ++ ++   +    P ++  +  +
Sbjct: 203 VRYEVDCADYAAVKATPVPVDKSEVLPEKKKSDMNPDIEVVNYGEVPHDVPLQVLTTYPQ 262

Query: 454 GASLPYSMVMMFLFSHAGHQLL 389
           GA  P+       F++A H+LL
Sbjct: 263 GAGFPFFTWAQLFFTNANHELL 284


>L15313-5|AAA28199.1|   99|Caenorhabditis elegans Hypothetical
           protein ZK353.2 protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 628 GGHYKCGK*TVQYKILLCSYNIHSMLVFRYTWTSKYLCI 744
           GG+ +CG   V Y+   C Y+ +   +   TW   +L I
Sbjct: 37  GGYGRCGADNVFYRWRCCDYSPYECCIQLETWVVVFLVI 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,683
Number of Sequences: 27780
Number of extensions: 340839
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)