Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p16
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.2  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   5.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -2

Query: 430 VMMFLFSHAGHQLLAPHTCA-GWNIQKLMQ-WLDTHRSEKERLDFVAGALQRYQNHIRQN 257
           +++ + +H G +      C  G+   K ++    TH  EK     + G    Y + ++ +
Sbjct: 191 LVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLH 250

Query: 256 QIASYDE-VYPVLL 218
           Q+A Y E VY   L
Sbjct: 251 QVAHYGEKVYKCTL 264


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 672 DLVLNGLFTTFVMSALLVNSV 610
           DLVL GLFT  ++  ++ N++
Sbjct: 37  DLVLAGLFTMLIIVTIVGNTL 57


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 144 YYLSFCYMEKHPTIL 100
           Y L  CY+E HP +L
Sbjct: 112 YQLVKCYVEFHPEVL 126


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 776 YMKEFTTVCV*MQRYLLV 723
           Y+  F  VC+ M RY  V
Sbjct: 123 YLSSFVLVCISMDRYYAV 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,297
Number of Sequences: 438
Number of extensions: 4148
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)