Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p14
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_55678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_10377| Best HMM Match : Vicilin_N (HMM E-Value=8.9) 31 1.4
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 29 3.3
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 5.7
SB_54965| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06) 29 5.7
SB_42866| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 44.4 bits (100), Expect = 1e-04
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMR---ALRSVSIPLPVWSMRALWAL-PIPG--PL 280
+M L A+R +P + V AMR L +MR A+R + P+ +MR L A+ P+P PL
Sbjct: 125 AMRPLSAMRPLP-AMRPVPAMRPLLAMRPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPL 183
Query: 279 WSLWSLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
++ L ++R L MRPLP P+P +P M
Sbjct: 184 PAMRPLPAMRPLSAMRPLPAMRPLPAIRPVPAM 216
Score = 43.6 bits (98), Expect = 2e-04
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWALP-IPG--PLWSL 271
+M L A+R +P + + AMR L +MR L ++ PV +MR L A+P +P PL ++
Sbjct: 179 AMRPLPAMRPLP-AMRPLSAMRPLPAMRPLPAIR---PVPAMRPLPAMPPVPAMRPLPAM 234
Query: 270 WSLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R L MRPLP P+P +P M
Sbjct: 235 RPLPAMRPLPAMRPLPAMPPLPAMRPLPAM 264
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWAL-PIPG--PLWSL 271
+M L A+R +P ++R + A+ + A+R V P+ +MR L A+ P+P PL ++
Sbjct: 113 AMHPLSAMRPLP----AMRPLSAMRPLPAMRPVPAMRPLLAMRPLPAMRPLPAMRPLPAM 168
Query: 270 WSLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R L MRPLP P+P +P M
Sbjct: 169 RPLPAMRPLPAMRPLPAMRPLPAMRPLSAM 198
Score = 43.2 bits (97), Expect = 2e-04
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = -3
Query: 423 AVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWALP-IPG--PLWSLWSLWSV 253
A+R +P + V AMR L +MR L ++ PLP +MR L A+P +P PL ++ L ++
Sbjct: 215 AMRPLP-AMPPVPAMRPLPAMRPLPAMR-PLP--AMRPLPAMPPLPAMRPLPAMRPLPAM 270
Query: 252 RTLRTMRPLPKPVPMPMSKPAKEM 181
R L MRPLP P+P +P M
Sbjct: 271 RPLPAMRPLPAMPPLPAMRPLPAM 294
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS-MRALWALPIPGPLWSLWS 265
+M L A+R +P + + AMR L +MR L ++ PLP + A+ LP PL ++
Sbjct: 287 AMRPLPAMRPLP-AMRPLPAMRPLPAMRPLPAMR-PLPAMRPLPAMCPLPAMRPLSAMRP 344
Query: 264 LWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R L MRPLP P+P +P M
Sbjct: 345 LPAMRPLPAMRPLPAMRPLPAMRPLPAM 372
Score = 42.3 bits (95), Expect = 4e-04
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMR---ALRSVSIPLPVWSMRALWAL-PIPG--PL 280
+M L A+R VP + + AMR L +MR A+R + P+ +MR L A+ P+P PL
Sbjct: 131 AMRPLPAMRPVP-AMRPLLAMRPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPL 189
Query: 279 WSLWSLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
++ L ++R L MRPLP P+P +P M
Sbjct: 190 PAMRPLSAMRPLPAMRPLPAIRPVPAMRPLPAM 222
Score = 42.3 bits (95), Expect = 4e-04
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWALP-IPG--PLWSL 271
+M L A+R +P + + AMR L +MR L ++ PLP +MR L A+P +P PL ++
Sbjct: 239 AMRPLPAMRPLP-AMPPLPAMRPLPAMRPLPAMR-PLP--AMRPLPAMPPLPAMRPLPAM 294
Query: 270 WSLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R L MRPLP P+P +P M
Sbjct: 295 RPLPAMRPLPAMRPLPAMRPLPAMRPLPAM 324
Score = 42.3 bits (95), Expect = 4e-04
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMR---ALRSVSIPLPVWSMRALWAL-PIPG--PL 280
+M L A+R +P + + AMR L +MR A+R + P+ +MR L A+ P+P PL
Sbjct: 269 AMRPLPAMRPLP-AMPPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPL 327
Query: 279 WSLWSLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
++ L ++R L MRPLP P+P +P M
Sbjct: 328 PAMCPLPAMRPLSAMRPLPAMRPLPAMRPLPAM 360
Score = 42.3 bits (95), Expect = 4e-04
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS-MRALWALPIPGPLWSLWS 265
+M L A+R +P + + AMR L +MR L ++ PLP + A+ LP PL ++
Sbjct: 299 AMRPLPAMRPLP-AMRPLPAMRPLPAMRPLPAMC-PLPAMRPLSAMRPLPAMRPLPAMRP 356
Query: 264 LWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R L MRPLP P+P +P M
Sbjct: 357 LPAMRPLPAMRPLPAMRPVPAMRPPPAM 384
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = -3
Query: 399 VSSVRAMRALWSMRALRSVSIPLPVWSMRALWAL-PIPG--PLWSLWSLWSVRTLRTMRP 229
V ++R + A+ + A+ +S P+ +MR L A+ P+P P+ ++ L ++R L MRP
Sbjct: 99 VPAMRPLSAMPQLPAMHPLSAMRPLPAMRPLSAMRPLPAMRPVPAMRPLLAMRPLPAMRP 158
Query: 228 LPKPVPMPMSKPAKEM 181
LP P+P +P M
Sbjct: 159 LPAMRPLPAMRPLPAM 174
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS-MRALWALPIPGPLWSLWS 265
+M L A+R +P + + AMR L +MR L ++ PLP + A+ LP PL ++
Sbjct: 143 AMRPLLAMRPLP-AMRPLPAMRPLPAMRPLPAMR-PLPAMRPLPAMRPLPAMRPLSAMRP 200
Query: 264 LWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R L +RP+P P+P P M
Sbjct: 201 LPAMRPLPAIRPVPAMRPLPAMPPVPAM 228
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -3
Query: 384 AMRALWSMRALRSVSIPLPVWS-MRALWALPIPGPLWSLWSLWSVRTLRTMRPLPKPVPM 208
AMR L +MR L ++ PLP + A+ LP PL ++ L ++R L MRPLP P+
Sbjct: 263 AMRPLPAMRPLPAMR-PLPAMPPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPLPAMRPL 321
Query: 207 PMSKPAKEM 181
P +P M
Sbjct: 322 PAMRPLPAM 330
Score = 39.5 bits (88), Expect = 0.003
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = -3
Query: 444 MSMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS-MRALWALPIPGPLWSLW 268
++M L A+R +P + + AMR L +MR L ++ PLP + A+ L PL ++
Sbjct: 148 LAMRPLPAMRPLP-AMRPLPAMRPLPAMRPLPAMR-PLPAMRPLPAMRPLSAMRPLPAMR 205
Query: 267 SLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R + MRPLP P+P +P M
Sbjct: 206 PLPAIRPVPAMRPLPAMPPVPAMRPLPAM 234
Score = 37.9 bits (84), Expect = 0.009
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS-MRALWALPIPGPLWSLWS 265
+M L A+ VP + + AMR L +MR L ++ PLP + A+ LP PL ++
Sbjct: 215 AMRPLPAMPPVP-AMRPLPAMRPLPAMRPLPAMR-PLPAMPPLPAMRPLPAMRPLPAMRP 272
Query: 264 LWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++R L M PLP P+P +P M
Sbjct: 273 LPAMRPLPAMPPLPAMRPLPAMRPLPAM 300
Score = 37.5 bits (83), Expect = 0.012
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS-MRALWALPIPGPLWSLWS 265
+M L A+R +P + + AMR L +MR L ++ PLP + A+ LP PL ++
Sbjct: 155 AMRPLPAMRPLP-AMRPLPAMRPLPAMRPLPAMR-PLPAMRPLSAMRPLPAMRPLPAIRP 212
Query: 264 LWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
+ ++R L M P+P P+P +P M
Sbjct: 213 VPAMRPLPAMPPVPAMRPLPAMRPLPAM 240
Score = 37.5 bits (83), Expect = 0.012
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = -3
Query: 441 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWAL-PIPG--PLWSL 271
+M L A+R +P ++R + A+ + A+R + PV +MR L A+ P+P PL ++
Sbjct: 191 AMRPLSAMRPLP----AMRPLPAIRPVPAMRPLPAMPPVPAMRPLPAMRPLPAMRPLPAM 246
Query: 270 WSLWSVRTLRTMRPLPKPVPMPMSKPAKEM 181
L ++ L MRPLP P+P +P M
Sbjct: 247 RPLPAMPPLPAMRPLPAMRPLPAMRPLPAM 276
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = -3
Query: 420 VRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWALPIPGPLWSLWSLWSVRTLR 241
+ VP S V AMR L +M L ++ P+ +MR L P PL ++ L ++R +
Sbjct: 90 INKVP-AFSPVPAMRPLSAMPQLPAMH---PLSAMRPL---PAMRPLSAMRPLPAMRPVP 142
Query: 240 TMRPLPKPVPMPMSKPAKEM 181
MRPL P+P +P M
Sbjct: 143 AMRPLLAMRPLPAMRPLPAM 162
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 345 VSIPLPVWSMRALWALPIPGPLWSLWSLWSVRTLRTMRPLPKPVPMPMSKP 193
V P+PV S + +PIP P + V + ++P+P PVP+P+ +P
Sbjct: 457 VPFPIPVHSPPQIEKVPIPFP-------YPVPSPPQIKPMPYPVPVPVRQP 500
>SB_55678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 227 KGRMVRKVRTDHRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTE 394
K R VRK R + + KG + K K R + + +RK R K R R E
Sbjct: 13 KVRKVRKERKVRKGRKVRKGRKVRKGRKERKGRKVRKVRKERKGRKGRKERKVRKE 68
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 227 KGRMVRKVRTDHRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHK 373
KGR VRK R + ++ KG + K K R G+ +RK R + K
Sbjct: 25 KGRKVRKGRKVRKGRKERKGRKVRKVRKERKGRKGR---KERKVRKERK 70
>SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 227 KGRMVRKVRTDHRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTE 394
K R VRK R + + KG + K K R + + +RK R K R R E
Sbjct: 53 KVRKVRKERKVRKGRKVRKGRKVRKGRKERKGRKVRKVRKERKGRKGRKERKVRKE 108
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 227 KGRMVRKVRTDHRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHK 373
KGR VRK R + ++ KG + K K R G+ +RK R + K
Sbjct: 65 KGRKVRKGRKVRKGRKERKGRKVRKVRKERKGRKGR---KERKVRKERK 110
>SB_10377| Best HMM Match : Vicilin_N (HMM E-Value=8.9)
Length = 181
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 236 MVRKVRTDHRDHRDH-KGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTEDTVQGT 412
+V K ++ RDH + I + ++ D K + DR+ R R V
Sbjct: 13 VVSKSFLKEQERRDHARERRINRFRQSESDDEDKSLQRDREHRSRRLGDSVRRPRRVSER 72
Query: 413 DRTAHRDHMDIRN*DSPLSSRPS 481
D R + N D+P ++RPS
Sbjct: 73 DENEDRGNWKGHNLDNPKANRPS 95
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 633 LKMHQGASFDFRGHQEKHRAVIGGPKRRVRLRDLAPGTRRPARL 502
L++H +F KH + GPKR+ + R P TR A L
Sbjct: 1225 LRIHHDQGKEFENDLHKHLEKLSGPKRKTKTR--KPATRNAAEL 1266
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/62 (32%), Positives = 23/62 (37%)
Frame = +2
Query: 251 RTDHRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTEDTVQGTDRTAHR 430
RTD HR + A R T TD R DH + RT T+ TD
Sbjct: 421 RTDSTQHRQCVPYRLYPAQTVRTVQTLPS--TDSAYRTDHPTQTVRTVQTLSSTDSAYRT 478
Query: 431 DH 436
DH
Sbjct: 479 DH 480
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +2
Query: 254 TDHRDHRDHKGPGIGKAHKA-----RMDHTGKGIDTDRKARMDHKARMARTEDTVQGTDR 418
T HR ++ P AH R + +TD R DH + RT T+ TD
Sbjct: 283 TQHRQCAPYRPPNTDSAHHTDSTQHRQCAPYRPQNTDSAHRTDHPTQTVRTVQTLPNTD- 341
Query: 419 TAHR 430
+AHR
Sbjct: 342 SAHR 345
>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 381 MRALWSMRALRSVSIPLPVWSMRALWALPIPGPLWSLWSLW 259
++ L RAL + I +W + W PIP L S+W W
Sbjct: 640 LQTLPQERALGAKLIIQELWPCKIDWDEPIPEELRSIWKSW 680
>SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = -3
Query: 444 MSMWSLWAVRSV--PWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWALPIPGPLWSL 271
++ WS+ + V W+V + R++ M +R VS+ L + W++ P+ +
Sbjct: 51 LTKWSVLTQQPVVTKWSVLTKRSVLTKQLMLTMRPVSV-LTKQPVLTKWSVLTKQPVVTK 109
Query: 270 WSLWSVRTLRTMRPL 226
WS+ + R++ T +P+
Sbjct: 110 WSVLTKRSVLTKQPV 124
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 225 PKPVPMPMSKPAKEM 181
PKPVP+P SKP +E+
Sbjct: 7 PKPVPLPRSKPKREV 21
>SB_54965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -3
Query: 702 VNKINVNNGFSSEEGCFDEKCVVLKMHQGASFDFRGHQEKH 580
++K+ + NGFS E C D C+ + + F Q ++
Sbjct: 4 IDKLALRNGFSQEFSCLDICCITVSLEIRLPFSSNSKQRQN 44
>SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)
Length = 484
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 299 KAHKARMDHTGKGIDTDRKARMDHKARMARTEDTV 403
KAH+ + +TG + T+ K R++H + + E+ V
Sbjct: 287 KAHRTPLRNTGSAMATEGKTRLNHLIKHQKYEEVV 321
>SB_42866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Frame = +2
Query: 212 GTGLGKGRMVRKVRTDHRDHRDHKGPGIGKAHKA------RMDHTGKGIDTDRKARMDHK 373
G G K M R D ++H + G G K H A + +H G D+K M+
Sbjct: 7 GRGDEKEHMADGGRRDKKEHMEDGGTGDKKEHMADGGRGDKKEHMADGGRGDKKEHMEDG 66
Query: 374 ARMARTEDTVQGTDRTAHRDHM 439
R + E G + ++HM
Sbjct: 67 GRRDKKEHIEDG-GKGDKKEHM 87
>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -2
Query: 376 GLVVHAGLAVRVDTLARMVHAGLVGLADSRAL 281
GLV AGLA RV +R+ A VGLA S L
Sbjct: 391 GLVSRAGLASRVGRASRVGLASRVGLASSVGL 422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,336,993
Number of Sequences: 59808
Number of extensions: 355993
Number of successful extensions: 1274
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -