Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p14
         (794 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          26   1.2  
CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    23   8.2  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = -3

Query: 732 IQNFQVTNRRVNKINVNN--GFSSEEGCFDEKCVVLKMHQGASF---DFRGHQEKHRAVI 568
           +  +Q+    ++  N  N  G      C  E  V   +  GA     D+RG+   HRAV+
Sbjct: 767 LHEYQLAEELLDLPNDRNETGLHLAVSCNSEPIVKALLGAGAKLHYCDYRGNTPLHRAVV 826

Query: 567 GGPKRRVRLRDLAPGTR 517
                 VRL  L  G R
Sbjct: 827 ENVPDMVRLLLLQGGLR 843


>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 539 ETWRPGRGDQLVSWRNYAEKKDEKKE 462
           E W P  G +L+   NY  K   KK+
Sbjct: 251 EHWIPHCGARLILNSNYTRKSSSKKD 276


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,938
Number of Sequences: 2352
Number of extensions: 10923
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)