Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p12
         (119 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   2.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   2.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   2.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   5.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    18   9.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 56  VCICFITAAL 85
           VC+CFI A+L
Sbjct: 369 VCMCFIYASL 378


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 56  VCICFITAAL 85
           VC+CFI A+L
Sbjct: 338 VCMCFIYASL 347


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 56  VCICFITAAL 85
           VC+CFI A+L
Sbjct: 389 VCMCFIYASL 398


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 56  VCICFITAAL 85
           VC+CFI A+L
Sbjct: 338 VCMCFIYASL 347


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 49  RLGLHLLYYCSTTTVL 96
           R+G   L Y + TT+L
Sbjct: 133 RMGYRALLYYTVTTIL 148


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 40  YHNRLGLHLLYYCSTTTVLPS 102
           Y+N      LYY +T +++ S
Sbjct: 265 YYNSPSSENLYYVNTESLMKS 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,661
Number of Sequences: 438
Number of extensions: 335
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)