Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p11
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   1.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.5  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   5.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   5.9  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 255 NIRNLDYESVRNKFA-SAENLKKLGDEFDEDSWAAERR 145
           N +N   E  R + A SAE L +L  EF E+ +  ERR
Sbjct: 12  NGKNGSPEEKRPRTAFSAEQLARLKREFAENRYLTERR 49


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 801 DVILTNSELDKIEKRVYETVSQELQTDESS 712
           D  LT SE  +++ R+Y   S   +TD+ S
Sbjct: 197 DPELTESEQHRLQNRLYTNDSTSSKTDDDS 226


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 801 DVILTNSELDKIEKRVYETVSQELQTDESS 712
           D  LT SE  +++ R+Y   S   +TD+ S
Sbjct: 235 DPELTESEQHRLQNRLYTNDSTSSKTDDDS 264


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 222 NKFASAENLKKLGDEFDEDSWAAERRDRVPSDLDI 118
           N+   A  L +   +  +++WA  R+D V S + +
Sbjct: 16  NRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAV 50


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 222 NKFASAENLKKLGDEFDEDSWAAERRDRVPSDLDI 118
           N+   A  L +   +  +++WA  R+D V S + +
Sbjct: 16  NRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAV 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,751
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)