Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p10
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       94   1e-21
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   1.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   1.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 94.3 bits (224), Expect = 1e-21
 Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 6/212 (2%)
 Frame = -2

Query: 809 ILDECDKMLESLDMRRDVQEIFRNT--PHG-KQVMMFSATLSKEIRPVCKKFMQDPMEVY 639
           +LDE D+ML+   +    + +   T  P G +Q +MFSAT   E++ + ++F+ + + + 
Sbjct: 352 VLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLA 411

Query: 638 VDDEAKLKLHGLQQHYVXXXXXXXXXXXXXXL---DVLEFNQVVIFVKSVQRCIALAQLL 468
           V           Q  Y                   D       ++FV+  ++   +A  L
Sbjct: 412 VGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFL 471

Query: 467 TDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPED 288
           ++ N+P   IH +  Q +R      FK  +  ILVAT +  RG+DI+ V+ V NYD+P+ 
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKG 531

Query: 287 SDTYLHRVARAGRFGTKGLAITMISDENDAKI 192
            D Y+HR+ R GR G +G A +    E DA +
Sbjct: 532 IDEYVHRIGRTGRVGNRGRATSFFDPEEDAPL 563


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 153 CNVHIETILYLV*DLGIIFIRYHSNGQTF 239
           CN + +T++Y+  + G   I YH++  +F
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYHNSDDSF 223


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 153 CNVHIETILYLV*DLGIIFIRYHSNGQTF 239
           CN + +T++Y+  + G   I YH++  +F
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYHNSDDSF 223


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 153 CNVHIETILYLV*DLGIIFIRYHSNGQTF 239
           CN + +T++Y+  + G   I YH++  +F
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYHNSDDSF 223


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 193 ILASFSSDIIVMARPLVPNLPARATRCRYVSESSGMS*LKTIFTL 327
           IL SFS       RP     P       YV   S +S +K  FTL
Sbjct: 15  ILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTL 59



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 144 RQLCNVHIETILYLV*DL 197
           RQLC++ IE+  Y + D+
Sbjct: 149 RQLCHIEIESFGYTMRDI 166


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 144 RQLCNVHIETILYLV*DL 197
           RQLC++ IE+  Y + D+
Sbjct: 149 RQLCHIEIESFGYTMRDI 166


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 144 RQLCNVHIETILYLV*DL 197
           RQLC++ IE+  Y + D+
Sbjct: 88  RQLCHIEIESFGYTMRDI 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,123
Number of Sequences: 438
Number of extensions: 5016
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)