Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p04
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    31   1.2  
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779...    29   4.7  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    29   6.2  
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515           29   6.2  
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046...    28   8.2  

>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 532 PMIYILMLVQVAHSTWTP-TDLSSARILTDLIMKVQDPTWRNPFQHARPFHTMTYVAKTE 356
           P++Y+L++ +    +WTP   L  A  + D +  +   T R+P    RP+    +  +T 
Sbjct: 266 PLLYVLLIKKFGIKSWTPWRHLQKAEKVLDPVPLIGFLTARSPLMAIRPY-GFVFRRETG 324

Query: 355 DSTS 344
           DS S
Sbjct: 325 DSDS 328


>03_02_0359 -
           7788382-7788522,7788931-7789837,7791227-7791337,
           7791437-7791507,7791582-7791659,7792564-7792770,
           7792867-7793046,7793249-7793471,7794133-7794453,
           7794538-7795109
          Length = 936

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 681 QEVANHYCQCHLWEWTKSWVWFQMSIFDGSVCXRSE 788
           Q   NH       EWT +W  FQ S+FD   C R +
Sbjct: 271 QNRRNHLILPKALEWTLNWCIFQ-SMFDSKFCVRKD 305


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 371 VGHRMKRTGVLEWVPPGWVLDLHYQVGKYPR 463
           V     +TGV++  P G +LDL   VGK  R
Sbjct: 19  VAQNANKTGVVDGFPVGVILDLQTMVGKIAR 49


>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
          Length = 916

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = -2

Query: 632 PGSYIGQILRDRKNGKIGGTSMPV-QTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSED 456
           P  +  Q L +   G + G+     Q  S YG    DI+   G    LDL++    F + 
Sbjct: 6   PHDFFSQSLNEAPTGHMDGSDYGFSQGSSGYGGYGTDIHFGGGGSGGLDLNSQADAFPDF 65

Query: 455 TYRPDNEGPGPNLEEPIPA 399
                   PG  +  PI A
Sbjct: 66  ASYQQILEPGSLVLPPIRA 84


>03_04_0079 +
           17102623-17102644,17102794-17102897,17104461-17104660,
           17104864-17105005,17105024-17105290
          Length = 244

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 434 GPGPNLEEPIPARPSVSYDDLRRQNRGQY 348
           GPGPN    +   PS+ ++ L +Q RG Y
Sbjct: 12  GPGPNTLIGLITEPSIYWNALYKQRRGGY 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,384,918
Number of Sequences: 37544
Number of extensions: 509703
Number of successful extensions: 1439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)