Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p04
(852 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC088361-1|AAH88361.1| 245|Homo sapiens OCIA domain containing ... 89 1e-17
BC003409-1|AAH03409.1| 245|Homo sapiens OCIA domain containing ... 89 1e-17
AK000462-1|BAA91181.1| 245|Homo sapiens protein ( Homo sapiens ... 89 1e-17
AF323665-1|AAG45220.1| 245|Homo sapiens ovarian carcinoma immun... 89 1e-17
AF251296-1|AAG44596.1| 245|Homo sapiens TPA018 protein. 89 1e-17
AF324350-1|AAK12121.1| 187|Homo sapiens ovarian immunoreactive ... 73 1e-12
AY472117-1|AAS47684.1| 154|Homo sapiens ovarian carcinoma immun... 68 5e-11
BC032808-1|AAH32808.1| 99|Homo sapiens OCIA domain containing ... 48 3e-05
AL442124-2|CAH73157.1| 457|Homo sapiens RP11-270C4__A.1 protein. 31 5.3
AL391319-3|CAI39895.1| 457|Homo sapiens RP11-270C4__A.1 protein. 31 5.3
AL138918-2|CAI20434.1| 457|Homo sapiens RP11-270C4__A.1 protein. 31 5.3
AL109940-2|CAI20529.1| 457|Homo sapiens RP11-270C4__A.1 protein. 31 5.3
AB014737-1|BAB20274.1| 457|Homo sapiens SMAP-2b protein. 31 5.3
>BC088361-1|AAH88361.1| 245|Homo sapiens OCIA domain containing 1
protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
+ EC+ ESF+ R +P +A T + G L +P++G PK+ LA ++GYF GKL
Sbjct: 33 RVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPKYGSIPKLILACIMGYFAGKL 92
Query: 671 SYQQACAEKLMALPGSYIGQILRD---RKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPG 501
SY + C EK L S +G+ LR R++ G + S ++ + S A
Sbjct: 93 SYVKTCQEKFKKLENSPLGEALRSGQARRSSPPGHYYQKSKYDSSVSGQSSFVTSPAADN 152
Query: 500 SSLDLDTNRPV-FSED------TYRPDN--EGPGPNLEEPIPARPSVSYDDLRRQNRGQY 348
+ L P+ FS T D+ +GP PNLEE P R +++Y++LR +NR Y
Sbjct: 153 IEM-LPHYEPIPFSSSMNESAPTGITDHIVQGPDPNLEES-PKRKNITYEELRNKNRESY 210
Query: 347 ---VKERQDP 327
+ ++ DP
Sbjct: 211 EVSLTQKTDP 220
>BC003409-1|AAH03409.1| 245|Homo sapiens OCIA domain containing 1
protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
+ EC+ ESF+ R +P +A T + G L +P++G PK+ LA ++GYF GKL
Sbjct: 33 RVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPKYGSIPKLILACIMGYFAGKL 92
Query: 671 SYQQACAEKLMALPGSYIGQILRD---RKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPG 501
SY + C EK L S +G+ LR R++ G + S ++ + S A
Sbjct: 93 SYVKTCQEKFKKLENSPLGEALRSGQARRSSPPGHYYQKSKYDSSVSGQSSFVTSPAADN 152
Query: 500 SSLDLDTNRPV-FSED------TYRPDN--EGPGPNLEEPIPARPSVSYDDLRRQNRGQY 348
+ L P+ FS T D+ +GP PNLEE P R +++Y++LR +NR Y
Sbjct: 153 IEM-LPHYEPIPFSSSMNESAPTGITDHIVQGPDPNLEES-PKRKNITYEELRNKNRESY 210
Query: 347 ---VKERQDP 327
+ ++ DP
Sbjct: 211 EVSLTQKTDP 220
>AK000462-1|BAA91181.1| 245|Homo sapiens protein ( Homo sapiens
cDNA FLJ20455 fis, clone KAT05813. ).
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
+ EC+ ESF+ R +P +A T + G L +P++G PK+ LA ++GYF GKL
Sbjct: 33 RVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPKYGSIPKLILACIMGYFAGKL 92
Query: 671 SYQQACAEKLMALPGSYIGQILRD---RKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPG 501
SY + C EK L S +G+ LR R++ G + S ++ + S A
Sbjct: 93 SYVKTCQEKFKKLENSPLGEALRSGQARRSSPPGHYYQKSKYDSSVSGQSSFVTSPAADN 152
Query: 500 SSLDLDTNRPV-FSED------TYRPDN--EGPGPNLEEPIPARPSVSYDDLRRQNRGQY 348
+ L P+ FS T D+ +GP PNLEE P R +++Y++LR +NR Y
Sbjct: 153 IEM-LPHYEPIPFSSSMNESAPTGITDHIVQGPDPNLEES-PKRKNITYEELRNKNRESY 210
Query: 347 ---VKERQDP 327
+ ++ DP
Sbjct: 211 EVSLTQKTDP 220
>AF323665-1|AAG45220.1| 245|Homo sapiens ovarian carcinoma
immunoreactive antigen protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
+ EC+ ESF+ R +P +A T + G L +P++G PK+ LA ++GYF GKL
Sbjct: 33 RVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPKYGSIPKLILACIMGYFAGKL 92
Query: 671 SYQQACAEKLMALPGSYIGQILRD---RKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPG 501
SY + C EK L S +G+ LR R++ G + S ++ + S A
Sbjct: 93 SYVKTCQEKFKKLENSPLGEALRSGQARRSSPPGHYYQKSKYDSSVSGQSSFVTSPAADN 152
Query: 500 SSLDLDTNRPV-FSED------TYRPDN--EGPGPNLEEPIPARPSVSYDDLRRQNRGQY 348
+ L P+ FS T D+ +GP PNLEE P R +++Y++LR +NR Y
Sbjct: 153 IEM-LPHYEPIPFSSSMNESAPTGITDHIVQGPDPNLEES-PKRKNITYEELRNKNRESY 210
Query: 347 ---VKERQDP 327
+ ++ DP
Sbjct: 211 EVSLTQKTDP 220
>AF251296-1|AAG44596.1| 245|Homo sapiens TPA018 protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
+ EC+ ESF+ R +P +A T + G L +P++G PK+ LA ++GYF GKL
Sbjct: 33 RVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPKYGSIPKLILACIMGYFAGKL 92
Query: 671 SYQQACAEKLMALPGSYIGQILRD---RKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPG 501
SY + C EK L S +G+ LR R++ G + S ++ + S A
Sbjct: 93 SYVKTCQEKFKKLENSPLGEALRSGQARRSSPPGHYYQKSKYDSSVSGQSSFVTSPAADN 152
Query: 500 SSLDLDTNRPV-FSED------TYRPDN--EGPGPNLEEPIPARPSVSYDDLRRQNRGQY 348
+ L P+ FS T D+ +GP PNLEE P R +++Y++LR +NR Y
Sbjct: 153 IEM-LPHYEPIPFSSSMNESAPTGITDHIVQGPDPNLEES-PKRKNITYEELRNKNRESY 210
Query: 347 ---VKERQDP 327
+ ++ DP
Sbjct: 211 EVSLTQKTDP 220
>AF324350-1|AAK12121.1| 187|Homo sapiens ovarian immunoreactive
antigen protein.
Length = 187
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/83 (39%), Positives = 48/83 (57%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
+ EC+ ESF+ R +P +A T + G L +P++G PK+ LA ++GYF GKL
Sbjct: 33 RVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPKYGSIPKLILACIMGYFAGKL 92
Query: 671 SYQQACAEKLMALPGSYIGQILR 603
SY + C EK L S +G+ LR
Sbjct: 93 SYVKTCQEKFKKLENSPLGEALR 115
>AY472117-1|AAS47684.1| 154|Homo sapiens ovarian carcinoma
immunoreactive antigen-like protein protein.
Length = 154
Score = 67.7 bits (158), Expect = 5e-11
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
K + EC +ESF++R LPFS + T V G+L N RFG PKV LA ++G+ LGK+
Sbjct: 41 KIMRECQEESFWKRALPFSLVSMLVTQGLVYQGYLAANSRFGSLPKVALAGLLGFGLGKV 100
Query: 671 SYQQACAEK 645
SY C K
Sbjct: 101 SYIGVCQSK 109
>BC032808-1|AAH32808.1| 99|Homo sapiens OCIA domain containing 2
protein.
Length = 99
Score = 48.4 bits (110), Expect = 3e-05
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKV 711
K + EC +ESF++R LPFS + T V G+L N RFG PKV
Sbjct: 41 KIMRECQEESFWKRALPFSLVSMLVTQGLVYQGYLAANSRFGSLPKV 87
>AL442124-2|CAH73157.1| 457|Homo sapiens RP11-270C4__A.1 protein.
Length = 457
Score = 31.1 bits (67), Expect = 5.3
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -2
Query: 626 SYIGQILRDRKNGK-IGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTY 450
SY G NG+ I GT++ +TP G+ + G G ++ L + S+D
Sbjct: 126 SYTGYCWCVTPNGRPISGTAVAHKTPRCPGSVNEKLPQREGTGKTVSLQIFSVLNSDDAA 185
Query: 449 RPDNEGPGPNLEEPIPAR-PSVSYDDLR-RQNR 357
P E EE I +R P++ + ++ RQN+
Sbjct: 186 APALETQPQGDEEDIASRYPTLWTEQVKSRQNK 218
>AL391319-3|CAI39895.1| 457|Homo sapiens RP11-270C4__A.1 protein.
Length = 457
Score = 31.1 bits (67), Expect = 5.3
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -2
Query: 626 SYIGQILRDRKNGK-IGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTY 450
SY G NG+ I GT++ +TP G+ + G G ++ L + S+D
Sbjct: 126 SYTGYCWCVTPNGRPISGTAVAHKTPRCPGSVNEKLPQREGTGKTVSLQIFSVLNSDDAA 185
Query: 449 RPDNEGPGPNLEEPIPAR-PSVSYDDLR-RQNR 357
P E EE I +R P++ + ++ RQN+
Sbjct: 186 APALETQPQGDEEDIASRYPTLWTEQVKSRQNK 218
>AL138918-2|CAI20434.1| 457|Homo sapiens RP11-270C4__A.1 protein.
Length = 457
Score = 31.1 bits (67), Expect = 5.3
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -2
Query: 626 SYIGQILRDRKNGK-IGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTY 450
SY G NG+ I GT++ +TP G+ + G G ++ L + S+D
Sbjct: 126 SYTGYCWCVTPNGRPISGTAVAHKTPRCPGSVNEKLPQREGTGKTVSLQIFSVLNSDDAA 185
Query: 449 RPDNEGPGPNLEEPIPAR-PSVSYDDLR-RQNR 357
P E EE I +R P++ + ++ RQN+
Sbjct: 186 APALETQPQGDEEDIASRYPTLWTEQVKSRQNK 218
>AL109940-2|CAI20529.1| 457|Homo sapiens RP11-270C4__A.1 protein.
Length = 457
Score = 31.1 bits (67), Expect = 5.3
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -2
Query: 626 SYIGQILRDRKNGK-IGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTY 450
SY G NG+ I GT++ +TP G+ + G G ++ L + S+D
Sbjct: 126 SYTGYCWCVTPNGRPISGTAVAHKTPRCPGSVNEKLPQREGTGKTVSLQIFSVLNSDDAA 185
Query: 449 RPDNEGPGPNLEEPIPAR-PSVSYDDLR-RQNR 357
P E EE I +R P++ + ++ RQN+
Sbjct: 186 APALETQPQGDEEDIASRYPTLWTEQVKSRQNK 218
>AB014737-1|BAB20274.1| 457|Homo sapiens SMAP-2b protein.
Length = 457
Score = 31.1 bits (67), Expect = 5.3
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -2
Query: 626 SYIGQILRDRKNGK-IGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTY 450
SY G NG+ I GT++ +TP G+ + G G ++ L + S+D
Sbjct: 126 SYTGYCWCVTPNGRPISGTAVAHKTPRCPGSVNEKLPQREGTGKTVSLQIFSVLNSDDAA 185
Query: 449 RPDNEGPGPNLEEPIPAR-PSVSYDDLR-RQNR 357
P E EE I +R P++ + ++ RQN+
Sbjct: 186 APALETQPQGDEEDIASRYPTLWTEQVKSRQNK 218
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,356,155
Number of Sequences: 237096
Number of extensions: 2872336
Number of successful extensions: 11214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11209
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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