Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p04
(852 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY089314-1|AAL90052.1| 257|Drosophila melanogaster AT12418p pro... 148 1e-35
AE013599-3497|AAF46923.1| 257|Drosophila melanogaster CG13533-P... 148 1e-35
AE014134-1162|AAN10598.1| 2922|Drosophila melanogaster CG11321-P... 33 0.50
AE014134-1161|AAF52435.2| 2594|Drosophila melanogaster CG11321-P... 33 0.50
BT022596-1|AAY55012.1| 297|Drosophila melanogaster IP11947p pro... 30 4.6
BT022528-1|AAY54944.1| 299|Drosophila melanogaster IP11847p pro... 30 4.6
AE014296-1525|AAF50362.1| 438|Drosophila melanogaster CG13307-P... 30 4.6
AY113530-1|AAM29535.1| 464|Drosophila melanogaster RE60735p pro... 29 6.1
AE014298-2584|AAN09590.1| 464|Drosophila melanogaster CG12991-P... 29 6.1
AE014298-2583|AAF48739.2| 464|Drosophila melanogaster CG12991-P... 29 6.1
>AY089314-1|AAL90052.1| 257|Drosophila melanogaster AT12418p
protein.
Length = 257
Score = 148 bits (358), Expect = 1e-35
Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 18/194 (9%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
KAL EC+ ESF+QR LPF Y VK G+L+ + ++G PKV + V++GYF+GK
Sbjct: 31 KALRECNTESFFQRSLPFGTGLGLLAYFGVKNGYLQGHVKYGAVPKVVMGVILGYFVGKF 90
Query: 671 SYQQACAEKLMALPGSYIGQILRDRKNGKIGGTSMPVQ---------TPSMYGATTNDIY 519
SYQQ CAEK+M LP S++G++LR R+ G GG + T + + ++ D+Y
Sbjct: 91 SYQQKCAEKIMRLPNSHLGELLRQRRQG--GGVISSITPDENLGRAFTLAPFSPSSADVY 148
Query: 518 SD----AGPGSSLDLDT-NRPVFS--EDTYRPD-NEGPGPNLEEPI-PARPSVSYDDLRR 366
SD G +SL+LDT +RP S +D YRP + G E P+ P++P SY+DLRR
Sbjct: 149 SDEAYQPGRSTSLNLDTESRPTLSGLDDIYRPTLDSGSMLEAELPLEPSKPGQSYEDLRR 208
Query: 365 QNRGQYVKERQDPY 324
+NR +Y K +Q PY
Sbjct: 209 RNREEYSKHQQSPY 222
>AE013599-3497|AAF46923.1| 257|Drosophila melanogaster CG13533-PA
protein.
Length = 257
Score = 148 bits (358), Expect = 1e-35
Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 18/194 (9%)
Frame = -2
Query: 851 KALEECDKESFYQRCLPFSALFASXTYAAVKYGHLKPNPRFGPFPKVTLAVVVGYFLGKL 672
KAL EC+ ESF+QR LPF Y VK G+L+ + ++G PKV + V++GYF+GK
Sbjct: 31 KALRECNTESFFQRSLPFGTGLGLLAYFGVKNGYLQGHVKYGAVPKVVMGVILGYFVGKF 90
Query: 671 SYQQACAEKLMALPGSYIGQILRDRKNGKIGGTSMPVQ---------TPSMYGATTNDIY 519
SYQQ CAEK+M LP S++G++LR R+ G GG + T + + ++ D+Y
Sbjct: 91 SYQQKCAEKIMRLPNSHLGELLRQRRQG--GGVISSITPDENLGRAFTLAPFSPSSADVY 148
Query: 518 SD----AGPGSSLDLDT-NRPVFS--EDTYRPD-NEGPGPNLEEPI-PARPSVSYDDLRR 366
SD G +SL+LDT +RP S +D YRP + G E P+ P++P SY+DLRR
Sbjct: 149 SDEAYQPGRSTSLNLDTESRPTLSGLDDIYRPTLDSGSMLEAELPLEPSKPGQSYEDLRR 208
Query: 365 QNRGQYVKERQDPY 324
+NR +Y K +Q PY
Sbjct: 209 RNREEYSKHQQSPY 222
>AE014134-1162|AAN10598.1| 2922|Drosophila melanogaster CG11321-PB,
isoform B protein.
Length = 2922
Score = 33.1 bits (72), Expect = 0.50
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -2
Query: 557 TPSMYGATTNDIYSDAGPGSSLDLDTNRPVFS---EDTYRPDNEGPGPNLEEPIPAR 396
TPSM G T N + GP +S TN+ S + T P N+ L + +P R
Sbjct: 2268 TPSMKGKTANSGTASKGPSTSSSTKTNKSTVSKIPKPTNEPTNKSNSTPLNKKVPLR 2324
>AE014134-1161|AAF52435.2| 2594|Drosophila melanogaster CG11321-PA,
isoform A protein.
Length = 2594
Score = 33.1 bits (72), Expect = 0.50
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -2
Query: 557 TPSMYGATTNDIYSDAGPGSSLDLDTNRPVFS---EDTYRPDNEGPGPNLEEPIPAR 396
TPSM G T N + GP +S TN+ S + T P N+ L + +P R
Sbjct: 1940 TPSMKGKTANSGTASKGPSTSSSTKTNKSTVSKIPKPTNEPTNKSNSTPLNKKVPLR 1996
>BT022596-1|AAY55012.1| 297|Drosophila melanogaster IP11947p
protein.
Length = 297
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -2
Query: 611 ILRDRKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEG 432
++ D G G TS + + +T+ + GS+ P F+EDTY +
Sbjct: 178 VITDSSTGSTGDTSTGSSSVTSSDTSTDSTVTVTDSGSTTQSTATTPAFNEDTYCQEINS 237
Query: 431 PGPNLEEPIP 402
G PIP
Sbjct: 238 TG---RYPIP 244
>BT022528-1|AAY54944.1| 299|Drosophila melanogaster IP11847p
protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -2
Query: 611 ILRDRKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEG 432
++ D G G TS + + +T+ + GS+ P F+EDTY +
Sbjct: 180 VITDSSTGSTGDTSTGSSSVTSSDTSTDSTVTVTDSGSTTQSTATTPAFNEDTYCQEINS 239
Query: 431 PGPNLEEPIP 402
G PIP
Sbjct: 240 TG---RYPIP 246
>AE014296-1525|AAF50362.1| 438|Drosophila melanogaster CG13307-PA
protein.
Length = 438
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -2
Query: 611 ILRDRKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEG 432
++ D G G TS + + +T+ + GS+ P F+EDTY +
Sbjct: 177 VITDSSTGSTGDTSTGSSSVTSSDTSTDSTVTVTDSGSTTQSTATTPAFNEDTYCQEINS 236
Query: 431 PGPNLEEPIP 402
G PIP
Sbjct: 237 TG---RYPIP 243
>AY113530-1|AAM29535.1| 464|Drosophila melanogaster RE60735p
protein.
Length = 464
Score = 29.5 bits (63), Expect = 6.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 572 SMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEGPGPNLEE 411
+ PV+T +Y T ++ A + +DL T+RP + P + G GP L +
Sbjct: 46 TQPVRTTKLYQTTVTQMWGPATQSNIMDL-THRPTTTRPVVTP-SYGGGPQLAQ 97
>AE014298-2584|AAN09590.1| 464|Drosophila melanogaster CG12991-PB,
isoform B protein.
Length = 464
Score = 29.5 bits (63), Expect = 6.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 572 SMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEGPGPNLEE 411
+ PV+T +Y T ++ A + +DL T+RP + P + G GP L +
Sbjct: 46 TQPVRTTKLYQTTVTQMWGPATQSNIMDL-THRPTTTRPVVTP-SYGGGPQLAQ 97
>AE014298-2583|AAF48739.2| 464|Drosophila melanogaster CG12991-PA,
isoform A protein.
Length = 464
Score = 29.5 bits (63), Expect = 6.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 572 SMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEGPGPNLEE 411
+ PV+T +Y T ++ A + +DL T+RP + P + G GP L +
Sbjct: 46 TQPVRTTKLYQTTVTQMWGPATQSNIMDL-THRPTTTRPVVTP-SYGGGPQLAQ 97
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,449,226
Number of Sequences: 53049
Number of extensions: 850402
Number of successful extensions: 2822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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