Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p04
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf (tbp-associ...    29   3.2  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    29   4.2  
U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 608 LRDRKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNE 435
           +R RK     G S  V TP  +GA       D GP S LDL+       +D Y  +N+
Sbjct: 96  MRSRKKPDDSGASSTVNTPKKFGALR---IEDRGPKSFLDLEYEEDDEYDDDYIEEND 150


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 608 LRDRKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNE 435
           +R RK     G S  V TP  +GA       D GP S LDL+       +D Y  +N+
Sbjct: 96  MRSRKKPDDSGASSTVNTPKKFGALR---IEDRGPKSFLDLEYEEDDEYDDDYIEEND 150


>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 503 LPGTSQPSTSGGITTPRSSQPPPLMSPV 530


>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
           protein F07A11.6c protein.
          Length = 2392

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 794 LPGTSQPSTSGGITTPRSSQPPPLMSPV 821


>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
           protein F07A11.6b protein.
          Length = 2407

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836


>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
           protein F07A11.6a protein.
          Length = 2211

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836


>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 503 LPGTSQPSTSGGITTPRSSQPPPLMSPV 530


>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
           protein F07A11.6c protein.
          Length = 2392

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 794 LPGTSQPSTSGGITTPRSSQPPPLMSPV 821


>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
           protein F07A11.6b protein.
          Length = 2407

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836


>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
           protein F07A11.6a protein.
          Length = 2211

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 635 MPSASQHMPAGMTTSPRSSQPLLPMSPL 718
           +P  SQ   +G  T+PRSSQP   MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836


>U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 11.1
           protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 452 YRPDNEGPGPNLEEPIPARPSVSYDD 375
           ++P+ E PGP+   P PARP+   DD
Sbjct: 202 HQPEEEAPGPS--RPAPARPARKLDD 225


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 449 RPDNEGPGPNLEEPIPARPS 390
           RP+   P P +E P+PARP+
Sbjct: 200 RPEPARPAPYIERPVPARPA 219


>U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical
           protein F48C1.6 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 401 ARPSVSYDDLRRQNRG 354
           A+ S +Y+D+RRQNRG
Sbjct: 127 AKSSTNYEDIRRQNRG 142


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 115 TNMATRWNDTVVLANLIHARGP*CCP 38
           TN  T WND + L+ L+    P  CP
Sbjct: 145 TNFRTNWNDGIALSALLEYCQPGLCP 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,152
Number of Sequences: 27780
Number of extensions: 420144
Number of successful extensions: 1102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)