Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p03
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.12 
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    26   2.0  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    24   8.2  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 190 ICFAVFFRFFGILHSHKHFATKI 258
           I F  FFRFFG L  ++HF   I
Sbjct: 278 ILFVEFFRFFGYLFDYEHFVLSI 300


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 249 REMFVAMKNAKKTKENSE-ADMV 184
           RE F  +K  +KTKEN+E AD V
Sbjct: 198 REDFTRLKKVQKTKENAEKADSV 220


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 294 KLEGRKEMPLSGNFRREMFVAMKNAKKTKENSEAD 190
           +LEG  E+P+   FRR  +   +  K  +E  + D
Sbjct: 14  QLEGTSELPVKKAFRRGDWEKEREKKYLQEKQQKD 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,006
Number of Sequences: 5004
Number of extensions: 20671
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)