Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p03
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...    32   0.16 
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493...    28   1.9  
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    28   1.9  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           27   4.4  
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    27   4.4  
02_01_0661 + 4931298-4931302,4932762-4933674,4935472-4935627,493...    26   7.7  

>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 248 RRKFPESGISFLPSNLSLNFKLKTQLKAVFSAI 346
           RR+   SG+S LPSN+S  FKL T++K + S++
Sbjct: 528 RRQAIISGLSNLPSNVSEVFKLDTEMKELASSL 560


>12_01_0603 +
           4937472-4938351,4938597-4938689,4938820-4939589,
           4939706-4939809,4940026-4940548,4940697-4941074
          Length = 915

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = -1

Query: 312 SLKLSDKLEGRKEMPLSGNFRREMF 238
           +L L DKL+ +K++PL+GN R+++F
Sbjct: 621 NLNLLDKLK-KKKLPLTGNARQQLF 644


>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 309 LKLSDKLEGRKEMPLSGNFRREMFVAMKNAKKTKENSEA 193
           +KLS  LEG  + P      ++   A KNAK T  + EA
Sbjct: 279 MKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEA 317


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 251  VAKCLWL*RMPKKRKKTA-KQIWLTMVKTIQQITMMKQTKQLPCLQNQLNRTNLPTL 84
            +A+CL+  ++P   +  + K +WL  + ++QQI    +     C+   L   NL T+
Sbjct: 838  LARCLYWEKLPSLGELVSLKHLWLECLPSLQQIGQSSEASSSNCVDLSL-PPNLDTM 893


>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 1   HKYINPIYYSFFNKLL 48
           HK+  PIYY  FN LL
Sbjct: 254 HKFYGPIYYYVFNSLL 269


>02_01_0661 +
           4931298-4931302,4932762-4933674,4935472-4935627,
           4935736-4935969
          Length = 435

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 23  IIHFSTNCLESLEDSLASMVLALVDLSDLIDF 118
           I+H   N +  L+D +AS+V A VDL  LI+F
Sbjct: 250 IMHQPENFVPVLDD-VASLVTATVDLFPLIEF 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,291,510
Number of Sequences: 37544
Number of extensions: 104271
Number of successful extensions: 233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)