Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p03
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical...    30   0.42 
Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    27   3.9  
Z81537-1|CAB04372.1|  326|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.4 protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
 Frame = -2

Query: 191 IWLTMVKTI--QQITMMKQTKQL--PCLQNQLNRTNLPTLEPYLPKN 63
           +W++++K +  + ITM+  +++L  P L    +  NLPT++PY+ +N
Sbjct: 301 LWISILKQMIGEDITMINTSRKLHTPRLAIVSSIVNLPTIQPYIFRN 347


>Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical
           protein T11A5.1 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -2

Query: 218 KKRKKTAKQIW----LTMVKTIQQITMMKQTKQLPCLQN 114
           KK+K  A+++W    LT  +  Q  T  ++T +LP +QN
Sbjct: 212 KKKKTEAEKLWDNMSLTEKEVFQSHTRRRRTTRLPIIQN 250


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
            protein F44D12.1 protein.
          Length = 1034

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 117  KSIKSDKSTNARTILAKESSKDSKQFVEK 31
            KS+K  K  N      K SSK++KQ +EK
Sbjct: 952  KSVKQLKDVNEHICGEKISSKEAKQLIEK 980


>Z81537-1|CAB04372.1|  326|Caenorhabditis elegans Hypothetical
           protein F41D3.1 protein.
          Length = 326

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 122 LQNQLNRTNLP-TLEPYLPKNLPKILSNLLK 33
           ++ Q N    P +LE  LP+NLP++LS   K
Sbjct: 80  VRKQKNNPRHPASLETQLPRNLPEMLSKFSK 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,016,773
Number of Sequences: 27780
Number of extensions: 112062
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)