Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p02
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 134 2e-32
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 52 8e-08
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 30 0.50
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 3.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.2
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.2
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 26 8.2
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 8.2
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 134 bits (324), Expect = 2e-32
Identities = 76/256 (29%), Positives = 134/256 (52%), Gaps = 4/256 (1%)
Frame = -3
Query: 837 DTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTN 658
D LE+A++ +++V++ + +PRKPG TR+ + NA +++ L A EA + TN
Sbjct: 88 DKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVVTN 147
Query: 657 PINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 478
P+N +P + + G + P +FG+T +D+ R+ F ++ A+ + +PV+GGHS
Sbjct: 148 PVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSG 207
Query: 477 KTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEFIDI 298
TI+PL L+ + + D L ++ G EVV K GA S+TL+MA++
Sbjct: 208 ATIVPL---LSQGGVELTGEKRDALIHRIQFGGDEVVKAKAGAGSATLSMAYAGARMASS 264
Query: 297 ILDAILGYRVVVNCYTANS----NFGTKFFAGPTSVGPHGIIQACCHFPMSEFESYLLNR 130
+L A+ G V C S + G FFA ++G G+ ++++E LL
Sbjct: 265 VLRALAGESGVEECTFVESPLYKDQGIDFFASRVTLGKDGVDTIHPVGKINDYEESLLKV 324
Query: 129 CIPILSREVLEGEKYV 82
+ L + + +GE++V
Sbjct: 325 ALGELKKSITKGEQFV 340
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 52.4 bits (120), Expect = 8e-08
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = -3
Query: 798 VVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPINYLIPFASTVM 619
VV+ + +KPG TR +L AN + + + + + ++A + ++TNP++ L +
Sbjct: 91 VVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVATNPVDVL----TYAT 146
Query: 618 YKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKTI 469
K + ++ G T IDT+R + + K ++ Q + +IG H D +
Sbjct: 147 LKLTGFPAERVIGSGTIIDTARFQYLIGKLYGLDPQSVNADIIGEHGDSEL 197
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 29.9 bits (64), Expect = 0.50
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 756 REQMLGANAPLIQ-RLCKAIAAQNQEAFVAISTNPINYLIPFASTVMYKYGCYNPSKMFG 580
RE ++G N ++ +L + + + E +++NP+N I A TV+Y N S + G
Sbjct: 860 RESIIGLNPRTLEAKLLLYLKSLDVEIDALVASNPLNIRIMAAETVVYIIDKLNQSVLEG 919
Query: 579 ITHI 568
T +
Sbjct: 920 KTSV 923
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 594 SKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKTIIPLFSNLTPR 439
S + I TSR + +L+ + G SD + PLFSNL+PR
Sbjct: 384 SLISNINQPSTSRIDTSFMLSLQHEIKNSHSEASDGTSDVHLTPLFSNLSPR 435
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 409 ISLAWFNTIISRS*IRKQRYDSLVRMTSYYRYLYLLC 519
I L W + +S + I K L+ ++YR L LLC
Sbjct: 3799 IDLIWLASKVSEAGIGKLDIGLLMEKPTFYRILQLLC 3835
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 6.2
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 246 NSNFGTKFFAGPTSVGPHGIIQACCH-FPMSEFESYLLNRCIPILSREVLEGEKYVEFME 70
++NFG +FFAG V I + C + SE E +L S+ VL+ E+Y F+
Sbjct: 80 DTNFGHEFFAGAVEVN-ENIWRGCRYILDFSEDEMHLDE------SKIVLD-ERYSLFLT 131
Query: 69 NVKG 58
NV G
Sbjct: 132 NVPG 135
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 243 SNFGTKFFAGPTSVGPHGIIQACCHFPMSE-FESY 142
+N GTK F+ V +I+AC P+ + E+Y
Sbjct: 267 NNRGTKLFSISGEVNEPNVIEACMSIPLKDLIENY 301
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 276 YRVVVNCYTANSNFGTKFFAGPTSVGPHGI 187
Y + +C T NS+ T F T PHG+
Sbjct: 156 YDICESCLTDNSHSNTHAFVRITKAYPHGL 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,206
Number of Sequences: 5004
Number of extensions: 78834
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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