Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p02
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 168 4e-42
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 163 1e-40
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 163 1e-40
01_06_1220 + 35493575-35494765 160 2e-39
08_02_0774 - 21047696-21048889 158 6e-39
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 146 2e-35
07_03_1371 - 26100553-26101767 146 2e-35
02_01_0042 + 295608-296222,298479-298925 68 1e-11
06_01_0033 - 346273-347355 66 5e-11
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 44 2e-04
09_04_0751 + 19927164-19927835,19927926-19928663 31 1.2
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 30 2.8
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 29 6.5
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 28 8.6
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 168 bits (409), Expect = 4e-42
Identities = 92/263 (34%), Positives = 153/263 (58%), Gaps = 2/263 (0%)
Frame = -3
Query: 855 VSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAF 676
V F+G LE A+ +LV++ + +PRKPG TR+ + NA +++ LC+ +A A
Sbjct: 95 VRGFLGPNQLEAALTGMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAKCCPNAI 154
Query: 675 VAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPV 496
V + +NP+N +P A+ V K G Y+P ++ G+T +D +R+ +FVA+ L I+ +++ VPV
Sbjct: 155 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPV 214
Query: 495 IGGHSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSI 316
+GGH+ TI+PL S + P P + LT+ ++ GTEVV K GA S+TL+MA++
Sbjct: 215 VGGHAGVTILPLLSQVHP-PCSFTPDEISYLTKRIQNGGTEVVEAKAGAGSATLSMAFAA 273
Query: 315 NEFIDIILDAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHFPMSEFESYL 139
+F D L A+ G VV C Y A++ FFA +G G + P+++FE
Sbjct: 274 AKFGDACLRAMRGDAGVVECSYVASAVTELPFFATKVRLGRAGAEEVLPLGPLNDFE--- 330
Query: 138 LNRCIPILSREVLEG-EKYVEFM 73
+ + +E++E +K ++FM
Sbjct: 331 -RAGLEMAKKELMESIQKGIDFM 352
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 163 bits (397), Expect = 1e-40
Identities = 88/258 (34%), Positives = 141/258 (54%), Gaps = 1/258 (0%)
Frame = -3
Query: 855 VSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAF 676
V F+G+ L +A+ S++V++ + +PRKPG TR+ + NA +++ LC AI+ A
Sbjct: 79 VKGFVGEEQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNAL 138
Query: 675 VAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPV 496
V + +NP+N +P A+ V K G Y+ K+FG+T +D R+++F A + E+ VPV
Sbjct: 139 VNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPV 198
Query: 495 IGGHSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSI 316
+GGH+ TI+PLFS TP + + LT+ + GTEVV K G S+TL+MA++
Sbjct: 199 VGGHAGITILPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG 258
Query: 315 NEFIDIILDAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHFPMSEFESYL 139
F D L + G VV C + ++ FFA +G +G+ + +SEFE
Sbjct: 259 AVFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQLSEFEKEG 318
Query: 138 LNRCIPILSREVLEGEKY 85
L L + +G K+
Sbjct: 319 LENLKGELKSSIEKGIKF 336
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 163 bits (397), Expect = 1e-40
Identities = 88/266 (33%), Positives = 143/266 (53%), Gaps = 1/266 (0%)
Frame = -3
Query: 879 SNLPGGPSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAI 700
S++ V F+GD L +A+ S++V++ + +PRKPG TR+ + NA +++ LC AI
Sbjct: 72 SHINAPAQVKGFMGDDQLGEALEGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAI 131
Query: 699 AAQNQEAFVAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKIN 520
A A V + +NP+N +P A+ V K G Y+ K+FG+T +D R+++F A +
Sbjct: 132 AKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVP 191
Query: 519 AQEIQVPVIGGHSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESS 340
++ VPV+GGH+ TI+PLFS TP + LT+ + GTEVV K G S+
Sbjct: 192 VTDVNVPVVGGHAGITILPLFSQATPATNALSDEDIKALTKRTQDGGTEVVEAKAGKGSA 251
Query: 339 TLAMAWSINEFIDIILDAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHFP 163
TL+MA++ F + L + G VV C + ++ FFA +G +G+ +
Sbjct: 252 TLSMAYAGAVFANACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVEEVLGLGQ 311
Query: 162 MSEFESYLLNRCIPILSREVLEGEKY 85
+S+FE L L + +G K+
Sbjct: 312 LSDFEKEGLENLKGELKASIEKGIKF 337
>01_06_1220 + 35493575-35494765
Length = 396
Score = 160 bits (388), Expect = 2e-39
Identities = 88/258 (34%), Positives = 146/258 (56%), Gaps = 3/258 (1%)
Frame = -3
Query: 846 FIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAI 667
F G + L + ++VV+ + +PRKPG TR+ + NA +++ L +A+A EAF+ I
Sbjct: 131 FTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPEAFIHI 190
Query: 666 STNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGG 487
+NP+N +P A+ V+ + G YNP K+FG+T +D R+ +F+A+ + ++ VPV+GG
Sbjct: 191 ISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVVGG 250
Query: 486 HSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEF 307
H+ TI+PL S P + + + LTR ++ AGTEVV K GA S+TL+MA++ F
Sbjct: 251 HAGITILPLLSKTRP-SVTFTNEETEELTRRIQNAGTEVVEAKAGAGSATLSMAYAAARF 309
Query: 306 IDIILDAILGYRVVVNCYTANSNF-GTKFFAGPTSVGPHGI--IQACCHFPMSEFESYLL 136
++ L A+ G V C S FFA +G +G+ I + ++E+E+ L
Sbjct: 310 VESSLRALAGDPDVYECTFVQSELTELLFFASRVKLGKNGVESIISSDLEGVTEYEAKAL 369
Query: 135 NRCIPILSREVLEGEKYV 82
P L + +G ++V
Sbjct: 370 ESLKPELKASIEKGIEFV 387
>08_02_0774 - 21047696-21048889
Length = 397
Score = 158 bits (383), Expect = 6e-39
Identities = 87/258 (33%), Positives = 145/258 (56%), Gaps = 3/258 (1%)
Frame = -3
Query: 846 FIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAI 667
F G + L + ++VV+ + +PRKPG TR+ + NA +++ L +A+A EAF+ I
Sbjct: 131 FTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNCPEAFIHI 190
Query: 666 STNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGG 487
+NP+N +P A+ V+ + G YNP K+FG+T +D R+ +FVA+ + ++ VPV+GG
Sbjct: 191 ISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 250
Query: 486 HSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEF 307
H+ TI+PL S P + + + LT+ ++ AGTEVV K GA S+TL+MA++ F
Sbjct: 251 HAGITILPLLSKTMP-SVTFTDEETEQLTKRIQNAGTEVVEAKAGAGSATLSMAYAAARF 309
Query: 306 IDIILDAILGYRVVVNCYTANSNF-GTKFFAGPTSVGPHGI--IQACCHFPMSEFESYLL 136
++ L A+ G V C S FFA +G +G+ I + ++E+E+ L
Sbjct: 310 VESSLRALAGDPDVYECTFVQSELTELPFFASRVKLGKNGVESIISADLEGVTEYEAKAL 369
Query: 135 NRCIPILSREVLEGEKYV 82
L + +G ++V
Sbjct: 370 EALKSELKASIEKGIEFV 387
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 146 bits (355), Expect = 2e-35
Identities = 85/268 (31%), Positives = 144/268 (53%), Gaps = 2/268 (0%)
Frame = -3
Query: 879 SNLPGGPSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAI 700
S++ G V F+G LE A+ +LV++ + +PRKPG TR+ + NA +++ LC+ I
Sbjct: 102 SHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI 161
Query: 699 AAQNQEAFVAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKIN 520
A A V + +NP+N +P A+ V K G Y+P ++ G+T +D R+ +FVA+ L ++
Sbjct: 162 AKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLD 221
Query: 519 AQEIQVPVIGGHSDKTIIPLFSNLTPR-NYRIEPCQADMLTRLVRKAGTEVVMHKHGAES 343
+++ VPVIGGH+ TI+PL S + P ++ E + LT ++ GTEVV
Sbjct: 222 PRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSE--EISYLTTRIQNGGTEVV-------- 271
Query: 342 STLAMAWSINEFIDIILDAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHF 166
A++ ++F D L + G +V C + A+ FFA +G GI +
Sbjct: 272 ----EAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLG 327
Query: 165 PMSEFESYLLNRCIPILSREVLEGEKYV 82
P++EFE L + L+ + +G ++
Sbjct: 328 PLNEFERAGLEKAKKELAESIQKGVAFI 355
>07_03_1371 - 26100553-26101767
Length = 404
Score = 146 bits (355), Expect = 2e-35
Identities = 85/267 (31%), Positives = 143/267 (53%), Gaps = 8/267 (2%)
Frame = -3
Query: 855 VSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAF 676
V+ F G L + ++VV+ + +PRKPG TR+ + G NA +++ L +A+A A
Sbjct: 130 VAGFTGKEELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADHAPAAL 189
Query: 675 VAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPV 496
V + +NP+N +P A+ V+ + G Y+P K+FG+T +D R+ +FVA+ + ++ VPV
Sbjct: 190 VHVISNPVNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDVPV 249
Query: 495 IGGHSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVV--MHKHGAESSTLAMAW 322
+GGH+ TI+PL S P+ + + + LTR ++ AGTEVV K G S+TL+MA+
Sbjct: 250 VGGHAAATILPLLSKARPKTAFTDE-EVEALTRRIQNAGTEVVEAKAKAGGGSATLSMAY 308
Query: 321 SINEFIDIILDAILGYRVVVNCYTANSNFGTK--FFAGPTSVGPHGIIQACCHFP----M 160
+ F++ L + G V C + FFA +G G+ + +
Sbjct: 309 AAARFLEASLRGLDGDADVYECSYVQCQAVPELPFFACRVKLGRDGVEEVAAAGAELRGL 368
Query: 159 SEFESYLLNRCIPILSREVLEGEKYVE 79
+EFE+ L P L + + +G Y +
Sbjct: 369 TEFEARALEALKPQLKKSIDKGVAYAQ 395
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 67.7 bits (158), Expect = 1e-11
Identities = 37/126 (29%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Frame = -3
Query: 843 IGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAIS 664
+ DT+L S+L ++ + + PG +R +L N L +++ A+A + EA + I
Sbjct: 97 VSDTDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIV 155
Query: 663 TNPINYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGG 487
+NP++ L + V +K + S++ G T++D+SR R +A+ L++NAQ++Q ++G
Sbjct: 156 SNPVDVL----TYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGE 211
Query: 486 HSDKTI 469
H D ++
Sbjct: 212 HGDSSV 217
>06_01_0033 - 346273-347355
Length = 360
Score = 65.7 bits (153), Expect = 5e-11
Identities = 37/123 (30%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Frame = -3
Query: 810 SSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPINYLIPFA 631
SS+LV++ + + PG TR +L N L +++ A A + E+ + I +NP++ L
Sbjct: 106 SSDLVIVTAGARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLVIVSNPVDVL---- 161
Query: 630 STVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKTIIPLFS 454
+ V +K + S++ G T++D+SR R +A+ L+++AQ++Q ++G H D + + L+S
Sbjct: 162 TYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLEVSAQDVQAYMVGEHGDSS-VALWS 220
Query: 453 NLT 445
+++
Sbjct: 221 SIS 223
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 44.0 bits (99), Expect = 2e-04
Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Frame = -3
Query: 861 PSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQ-NQ 685
P + + T++ +A N+ VMV PRK G R+ ++ N + + A+ A
Sbjct: 64 PLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAP 123
Query: 684 EAFVAISTNPINYLIPFASTVMYKYGCYNPSK-MFGITHIDTSRSRSFVAKALKINAQEI 508
V + NP N + ++ ++ P K + +T +D +R+ +++ L + ++
Sbjct: 124 NCKVLVVANPAN----TNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDV 179
Query: 507 QVPVIGGHSDKTIIPLFSNLT 445
+ +I G+ T P ++ T
Sbjct: 180 KNAIIWGNHSSTQYPDVNHAT 200
>09_04_0751 + 19927164-19927835,19927926-19928663
Length = 469
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -3
Query: 138 LNRCIPILSREVLEGEKYVEFMENVKG 58
L RC+ REV+EGE+ EFMEN G
Sbjct: 414 LERCV----REVMEGERSKEFMENANG 436
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -3
Query: 846 FIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAI-AAQNQEAFVA 670
F GD+ + L++ + R R+P N +L +++ I L A AA N F
Sbjct: 177 FAGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTI 236
Query: 669 I---STNPINYLIPFASTVMYKYG 607
+P ++IPFA YG
Sbjct: 237 FYNPRASPTEFVIPFAKYQKAVYG 260
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 609 GCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPV 496
GC K+ +I RS+ F K K+NA+E++ P+
Sbjct: 119 GCAPLEKLRADHNIQDVRSKIFPLKRKKVNAEEVESPI 156
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 356 CLCITTSVPAFLTSLVNISAWHGSIR*FRGVKFENS 463
CLC V AF+ N AW GSIR G K NS
Sbjct: 208 CLC-AEPVAAFIDE--NFVAWGGSIRRTEGFKMSNS 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,337,972
Number of Sequences: 37544
Number of extensions: 454883
Number of successful extensions: 1099
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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