Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p02
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.30 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 555 FLTCLYA*FQTFWTDCNTRIYTLQYLQKVSDNLWG 659
           F  C    F   + D   ++Y   + Q+ S NLWG
Sbjct: 455 FFICPSIHFAQLFADRGMKVYYYFFTQRTSTNLWG 489


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 573 HIDTSRSRSFVAKALKINAQEIQVPVIG-GHSDKTIIPLFSNLTPRNY 433
           H   S ++    K   + AQ + +  +   H D+TI P+FS L    Y
Sbjct: 84  HYQMSGAKQKKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEY 131


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 655 GVGRYSYKRFLILSCNG 705
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 655 GVGRYSYKRFLILSCNG 705
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 655 GVGRYSYKRFLILSCNG 705
           G   Y  +R LILSC G
Sbjct: 223 GTVNYLMRRHLILSCQG 239


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 655 GVGRYSYKRFLILSCNG 705
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 377 VPAFLTSLVNISAWH 421
           VP+F+   V + +WH
Sbjct: 126 VPSFVADFVKVLSWH 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,689
Number of Sequences: 438
Number of extensions: 5410
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)