Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11p01
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 458 e-130
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 232 6e-62
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 231 1e-61
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 163 2e-41
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 30 0.52
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 2.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 4.8
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 26 6.4
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 6.4
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 26 6.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 8.4
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 26 8.4
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 26 8.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 458 bits (1130), Expect = e-130
Identities = 208/270 (77%), Positives = 242/270 (89%)
Frame = -1
Query: 903 EEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTLK 724
EEYPDR+M TFSV P+PK SDTVVEPYNATLS+HQLVEN+DE++CIDNEAL I TLK
Sbjct: 157 EEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLK 216
Query: 723 LTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSR 544
+ +P+Y DLNHLVSA M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFF+ GFAPL +
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276
Query: 543 GSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNK 364
GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q K
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 363 NSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLH 184
NS+YFVEWIP+NV AVC +PP+ LKMSATFIGNST+IQE+F+R+ +QF+AMFRRKAFLH
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLH 396
Query: 183 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 94
WYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 232 bits (567), Expect = 6e-62
Identities = 103/275 (37%), Positives = 168/275 (61%), Gaps = 8/275 (2%)
Frame = -1
Query: 900 EYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKL 721
EY + FSV P+P+VS +VVEPYN+ L+ H ++N+D ++ +DNEA YDIC R L +
Sbjct: 164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDI 223
Query: 720 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRG 541
PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+ S
Sbjct: 224 ERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAA 283
Query: 540 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKN 361
+ + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + +I+++
Sbjct: 284 KAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRR 343
Query: 360 SSYFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRVSEQFTAMF 205
+ FV+W P K +C PP+ + + + N+T+I E + R+ +F M+
Sbjct: 344 TIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMY 403
Query: 204 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 100
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 404 SKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 231 bits (565), Expect = 1e-61
Identities = 104/275 (37%), Positives = 166/275 (60%), Gaps = 8/275 (2%)
Frame = -1
Query: 900 EYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKL 721
EY + FSV P+P+VS +VVEPYN+ L+ H ++ D ++ +DNE+ YDIC R L +
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219
Query: 720 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRG 541
P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+ S
Sbjct: 220 ERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAA 279
Query: 540 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKN 361
+ + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + I+ K
Sbjct: 280 KAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKR 339
Query: 360 SSYFVEWIPNNVKTAVCDIPPRGLKMS--------ATFIGNSTAIQELFKRVSEQFTAMF 205
+ FV+W P K +CD PP+ ++ S + N+T+I E + R+ +F M+
Sbjct: 340 TIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMY 399
Query: 204 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 100
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 400 SKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 163 bits (397), Expect = 2e-41
Identities = 87/278 (31%), Positives = 154/278 (55%), Gaps = 11/278 (3%)
Frame = -1
Query: 903 EEYPDRIMNTFSVVP-SPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTL 727
+ YP +I+ T+SV P S VSD VV+PYN+ L++ +L N D +DN AL I L
Sbjct: 159 DRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRL 218
Query: 726 KLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTS 547
PT+ N LVS MS TT LR+PG +N DL + +++P PR HF + + P T+
Sbjct: 219 HTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTN 278
Query: 546 RGSQQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAVFRGRMSMKEVDEQMM 379
+ ++ +A+ TV ++ +++ KN M + +P + ++++ + +G +V + ++
Sbjct: 279 QQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLL 338
Query: 378 NIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMSATFIGNSTAIQELFKRVSEQFTAM 208
I+ + + F+ W P +++ A+ P ++S + N T+I LFKR +Q+ +
Sbjct: 339 RIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRL 398
Query: 207 FRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 103
+R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 399 RKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 426 VFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIG--NSTA 253
V+ + ++ + + +MNI+ N S W+PN + +P G K+S I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 252 IQELFK 235
+EL++
Sbjct: 403 KEELYE 408
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/87 (28%), Positives = 40/87 (45%)
Frame = +3
Query: 480 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 659
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 380 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 435
Query: 660 SSRLTLSPKQDGSSRHKSGLLASACGS 740
+S LS ++ S S+ S
Sbjct: 436 ASSTPLSSVNSTTATSASSTPLSSVNS 462
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 480 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 659
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 494 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 549
Query: 660 SSRLTLS 680
+S L+
Sbjct: 550 ASSTPLT 556
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 264 NSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 157
NS+ IQ L K ++ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 699 LNHLVSATMSGVTTCLRFPGQLN 631
L HLV A + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 636 TDQGTVDKSSRLTLSPKQDGSSRHKSGLLASA 731
+ Q DKSS L ++ KQ S HK L A
Sbjct: 347 SQQPVADKSSNLFVTSKQSSVSGHKDNLTEEA 378
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 700 LEPSCFGDNVRRDDLSTVPWSVECRSAQASSEHGAVPTVALFH 572
LE F DN + +++S C + A+S H A AL H
Sbjct: 523 LETKKFSDNSQGEEISDNLHGESCNNPNANSVHSAQLLQALLH 565
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 714 GLLASACGSRYHTEPRCQCSTIHLYFLPTDVLKGWH 821
G + S C S + EPR CST H F + K H
Sbjct: 262 GFVCSVCLSIF-CEPRVHCSTCHTKFTVEPMSKKLH 296
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 270 IGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 94
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 447 RYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPN 331
+Y+ +VF G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 8.4
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -1
Query: 801 QLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL 622
Q+ NTD S N LY RT+ DLN S + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 621 RKLAVNMV 598
R +A+NM+
Sbjct: 353 RYVALNML 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,668
Number of Sequences: 5004
Number of extensions: 67643
Number of successful extensions: 239
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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