Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11p01
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   5.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 430 RCLPRSHVYEGGGRTNDEHSE 368
           +C+   H+   GG  ND H+E
Sbjct: 300 KCVSGEHLSVSGGALNDCHAE 320


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 633 STDQGTVDKSSRLTLSPKQD 692
           S+D G    +SRLTLS   D
Sbjct: 229 SSDSGVTMSTSRLTLSEMMD 248


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 885 IMNTFSVVPSPKVSDTVVEPYNATLSVHQLVEN 787
           I + F ++ +PKVS+       ATLS  +++ N
Sbjct: 546 IRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,400
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)