Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11o23
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 65 3e-12
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 58 4e-10
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 52 2e-08
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 51 5e-08
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 46 1e-06
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 44 5e-06
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 42 2e-05
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 40 7e-05
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 35 0.003
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 35 0.003
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 35 0.003
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 33 0.008
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 30 0.095
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 0.67
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 1.2
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 25 2.0
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 25 2.7
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 2.7
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 25 3.6
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 24 4.7
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 24 4.7
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 24 4.7
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 24 4.7
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 6.3
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 24 6.3
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 24 6.3
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 23 8.3
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 8.3
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 64.9 bits (151), Expect = 3e-12
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = -1
Query: 301 CNKGFGLMRNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKPFIDSSLTK 125
CNK N+ SH++ H ++PY C++CK GF+R+ D+K HL+IH +P++ L +
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKR 508
Score = 42.3 bits (95), Expect = 2e-05
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSH 176
C++C GF +L+ H+++H +PYVCE C K F R + H
Sbjct: 475 CDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRH 518
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 57.6 bits (133), Expect = 4e-10
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -1
Query: 301 CNKGFGLMRNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKPF 146
CNK F NL+SHM H +P+ C +CKK F R D + H ++HT K F
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAF 628
Score = 39.5 bits (88), Expect = 1e-04
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLK 170
C +C K F + R H +LH K + C C + F R + H K
Sbjct: 602 CSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYK 648
Score = 33.5 bits (73), Expect = 0.008
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 232 YVCEV--CKKGFIRNSDMKSHLKIHTREKPFIDSSLTKS 122
YVC C K F R ++KSH+ HT +PF S KS
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKS 608
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 52.4 bits (120), Expect = 2e-08
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 307 EVCNKGFGLMRNLRSHMKLHAEEKPYVCEV--CKKGFIRNSDMKSHLKIHTREKPF 146
E C K + L H++ H+ E+P+VC+ C K F R S +K H + HT KPF
Sbjct: 28 EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPF 83
Score = 43.2 bits (97), Expect = 1e-05
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHA----EEKPYVC--EVCKKGFIRNSDMKSHLK-IHTREK 152
C +C + F +LR H+ LH E K Y C E CKK F R+S +K H+ IH
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 151 PF-IDSSLTK 125
F DS TK
Sbjct: 266 AFHCDSCGTK 275
Score = 39.5 bits (88), Expect = 1e-04
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 301 CNKGFGLMRNLRSHMKLHAEEKPYVC--EVCKKGFIRNSDMKSHLKIHTREKPF 146
C+K F +L+ H + H KP+ C + C F ++ H+++H + KP+
Sbjct: 60 CSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPY 113
Score = 33.9 bits (74), Expect = 0.006
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -1
Query: 277 RNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKPFI 143
+NLRS K+ PY E C K + R S ++ HL+ H+ E+PF+
Sbjct: 14 KNLRSAKKIF--HCPY--EECGKKYSRPSLLEQHLRTHSNERPFV 54
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 50.8 bits (116), Expect = 5e-08
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -1
Query: 313 ICEVCNKGFGLMRNLRSHMK-LHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKP 149
+C C+K F +LR H++ LH EKP+VC +C K F R +++ H ++H P
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNASP 478
Score = 36.7 bits (81), Expect = 8e-04
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 238 KPYVCEVCKKGFIRNSDMKSHLK-IHTREKPFI 143
K +VC C K F R+ ++ H++ +HT EKPF+
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFV 453
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 46.4 bits (105), Expect = 1e-06
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEKPYVCEV--CKKGFIRNSDMKSHLKIHT 161
C +C K F + + H++ H EKP+VC C K F R+ ++ H +IHT
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 36.7 bits (81), Expect = 8e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 238 KPYVCEVCKKGFIRNSDMKSHLKIHTREKPFI 143
+PY C +C K F R H++ HT EKP +
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHV 55
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 44.0 bits (99), Expect = 5e-06
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -1
Query: 238 KPYVCEVCKKGFIRNSDMKSHLKIHTREKPFIDSSL 131
K YVCE C + F R +K H++ HT EKPF S +
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEI 103
Score = 40.7 bits (91), Expect = 5e-05
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = -1
Query: 313 ICEVCNKGFGLMRNLRSHMKLHAEEKPYVC-EV------CKKGFIRNSDMKSH-LKIHTR 158
+CE C + F + +L+ H++ H EKP+ C E+ C + F R + H KIH
Sbjct: 71 VCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRN 130
Query: 157 EKP 149
+P
Sbjct: 131 PQP 133
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 42.3 bits (95), Expect = 2e-05
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEKPYVCEV--CKKGFIRNSDMKSHLKIH 164
C C +GF +L+ H H E+P+VC+ C K F S+M+ H +IH
Sbjct: 470 CTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 35.1 bits (77), Expect = 0.003
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 232 YVCEVCKKGFIRNSDMKSHLKIHTREKPFI 143
Y C C +GF R S +K H HT E+PF+
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFV 497
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 40.3 bits (90), Expect = 7e-05
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEKPYVCEV--CKKGFIRNSDMKSHLKIHTRE 155
C C + F + H++ H EKP+ C CKK F R ++ H++ H R+
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRK 59
Score = 35.1 bits (77), Expect = 0.003
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 238 KPYVCEVCKKGFIRNSDMKSHLKIHTREKPF 146
K Y C CK+ F R H++ HT EKPF
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPF 32
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 35.1 bits (77), Expect = 0.003
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -1
Query: 301 CNKGFGLMRNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHL 173
C K F + R H + H K ++C C F R+ + H+
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHV 66
Score = 29.9 bits (64), Expect = 0.095
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = -1
Query: 232 YVCEV--CKKGFIRNSDMKSHLKIHTREKPFI----DSSLTKSVVM 113
Y C+ C K F R + H + HT K FI SS T+S V+
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVL 62
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 35.1 bits (77), Expect = 0.003
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 301 CNKGFGLMRNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLK 170
C K F +LR H + H K + C C + F R+ + H++
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQ 76
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 34.7 bits (76), Expect = 0.003
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKPFID 140
C+ C K F NL H H++ +P C C+ R +K H++ +K I+
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDKSVIE 89
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 33.5 bits (73), Expect = 0.008
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 271 LRSHMKLHAEEKPYVCEV--CKKGFIRNSDMKSHLK 170
L +H++ H EKP++C V C + F R+ + H++
Sbjct: 93 LVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMR 128
Score = 31.1 bits (67), Expect = 0.041
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = -1
Query: 283 LMRNLRSHMKLHAEEKP-YVCEV--C-KKGFIRNSD--MKSHLKIHTREKPFIDS 137
L+ N+ S + +P Y CE C +KG ++ S + +HL+ HT EKPFI S
Sbjct: 55 LISNINSILDHIGNRRPKYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICS 109
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.9 bits (64), Expect = 0.095
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 262 HMKLHAEEKPYVCEVCKKGFIRNSDMKSH 176
H E KPY CEVC K + + +K H
Sbjct: 389 HQGFVVENKPYRCEVCSKRYKNLNGLKYH 417
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 0.67
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEKPYVCEVC 215
CE+C++ + S KL A+EK ++C +C
Sbjct: 1187 CELCHEWYHAKCMKMSKKKLRADEK-FICPIC 1217
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 310 CEVCNKGFGLMRNLRSHMKLHAEEK 236
CEVC K FG + +H K A K
Sbjct: 245 CEVCQKFFGKITVFEAHKKSKAHNK 269
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 189 SLFLIKPFLHTSHT*G--FSSACNFIWDLKL 275
S+ ++ +H +T G F A NF+W KL
Sbjct: 184 SILSVEDLIHEIYTVGPNFKQAANFLWPFKL 214
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 189 SLFLIKPFLHTSHT*G--FSSACNFIWDLKL 275
S+ I+ +H +T G F A NFIW +L
Sbjct: 185 SILSIEDLIHEIYTVGPNFKQAANFIWPFQL 215
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 2.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 265 SHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKPFIDSS 134
S K+ + KP CE C++ F + +SH++ +R + F +++
Sbjct: 486 SQRKIRVDAKPGYCENCREKF---DNFESHIR-SSRHRRFAENN 525
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -1
Query: 268 RSHMKLHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKPFIDSSL 131
+S M++H + K +C+ C + + +R+ P ID L
Sbjct: 45 KSVMRIHPDIKRTICKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.2 bits (50), Expect = 4.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 214 KKGFIRNSD--MKSHLKIHTREKPFIDSSLTKSVVMIVLEY 98
KK FI N MKSH H FID+ KS + +V+EY
Sbjct: 424 KKEFIVNEILVMKSHH--HKNIVNFIDTFFYKSELWMVMEY 462
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 24.2 bits (50), Expect = 4.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 95 LILENNHHYALR 130
LIL+N HHY LR
Sbjct: 278 LILKNKHHYILR 289
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 4.7
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 214 KKGFIR-NSDMKSHLKIHTREKPFIDSSLTKS 122
++G++ SDM SH + KP + S T S
Sbjct: 95 ERGYVTVESDMSSHNTLDRNSKPTVSHSYTNS 126
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.2 bits (50), Expect = 4.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -1
Query: 283 LMRNLRSHMKLHAEEKPYVCEVCKKGF 203
L++ + M+ + K YVC C K F
Sbjct: 119 LVKTVEDRMRNDFDSKGYVCPFCNKKF 145
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 23.8 bits (49), Expect = 6.3
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +1
Query: 160 WYVFLDAISYHYFL*NLSCILHIHKVFLRHAISYGILNYALVQN-----LYYTLH 309
+Y L +S+ L +L C ++ H + H + +Y+L + L+YTL+
Sbjct: 35 FYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSLCLSLVALLLFYTLY 89
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 23.8 bits (49), Expect = 6.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 253 LHAEEKPYVCEVCKKGFIRNSDMKSHLKIHTREKP 149
LH + KP + +KG + +D K+HT P
Sbjct: 148 LHRDVKPDNILLDEKGHCKLADFNVAAKVHTSSSP 182
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 23.8 bits (49), Expect = 6.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 232 YVCEVCKKGFIRNSDMKSHLKIH 164
Y C CK F + D+ +H ++H
Sbjct: 389 YACPSCKNHFCLDCDVFAHEQLH 411
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 23.4 bits (48), Expect = 8.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 244 EEKPYVCEVCKKGF 203
E+ P+VC +CKK +
Sbjct: 248 EDIPFVCLICKKDY 261
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 11 LGVLIVAATSMTAALKVVVILLRRWNDSLIL---ENNHHYALRQRRVDK 148
+G+L+ L +V+++ R W L+ +NN++ L V K
Sbjct: 168 IGILVGVVVGSVFLLAIVMVIARIWGPRLLANKDQNNNNEDLDSNLVSK 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,558
Number of Sequences: 5004
Number of extensions: 25367
Number of successful extensions: 118
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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