Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o22
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   1.8  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    23   5.4  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    23   7.2  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    23   7.2  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    23   7.2  

>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 114 LQXSNADITNLLKYIKTRLFENSMLKDDLLXGK 16
           +  + AD T +L+++KT + + S + DD +  K
Sbjct: 69  IDLTKADQTEVLQFLKTYVEDESFVGDDFVMPK 101


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 29  RSSFNIEFSNRRVLMYFKRLVMSAL 103
           RSS N+  SNR  L  FK    S L
Sbjct: 176 RSSKNLSVSNRLQLAVFKETTSSTL 200


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 195 PARNXNVKLEVELKDXEDHDKIAVAAVLQXSNADITNLL 79
           PA+     L ++L   +D + +A +     SNA   N L
Sbjct: 438 PAKRKRESLVIDLTISDDDENVATSTTESPSNATKENSL 476


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 109 LQDCGHCYFVVIFXVFQLDF 168
           L++C  C++ V+  V++ +F
Sbjct: 570 LRECSFCFYAVLARVYKEEF 589


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 27  EDRLSTSNSRTGGS*CTLKDW 89
           EDR++T+ SR+G    +L D+
Sbjct: 330 EDRITTNQSRSGNDESSLVDF 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,472
Number of Sequences: 5004
Number of extensions: 9954
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)