Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o22
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0743 - 5763654-5766902                                           29   0.70 
01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041     25   8.6  

>01_01_0743 - 5763654-5766902
          Length = 1082

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 43  HRILEQAGLDVL*KIGNVCIAXLQDCGH 126
           H  LE+ GL V   +GN  IA    CGH
Sbjct: 219 HGYLEKLGLGVQCAVGNALIALYSRCGH 246


>01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041
          Length = 246

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 217 PDPRNHLXSXEXQCKIRSRAER 152
           P+PRN+       C+++ R ER
Sbjct: 154 PNPRNYYRCSSEGCRVKKRVER 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,287,816
Number of Sequences: 37544
Number of extensions: 82493
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)