Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o22
         (230 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   2.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   2.6  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    19   6.1  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    19   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   8.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 94  HYQSFKVHQDP 62
           +Y S+K+HQ P
Sbjct: 428 YYHSYKMHQKP 438


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 94  HYQSFKVHQDP 62
           +Y S+K+HQ P
Sbjct: 428 YYHSYKMHQKP 438


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 117 VLQXSNADITNLLKYIKTRLFENSMLKDD 31
           V+   NAD   L+K I     EN+  + D
Sbjct: 96  VVHAGNADDIQLVKGIANECIENAKGETD 124


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 117 VLQXSNADITNLLKYIKTRLFENSMLKDD 31
           V+   NAD   L+K I     EN+  + D
Sbjct: 96  VVHAGNADDIQLVKGIANECIENAKGETD 124


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/11 (72%), Positives = 8/11 (72%), Gaps = 1/11 (9%)
 Frame = -2

Query: 229  PEPIPDP-RNH 200
            PEP P P RNH
Sbjct: 1857 PEPPPPPPRNH 1867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,863
Number of Sequences: 438
Number of extensions: 703
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)