Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o20
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    28   0.13 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    28   0.13 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    26   0.51 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.68 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.89 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.89 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.89 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3

Query: 505 CLTTYLLNGNTSLNKQCKETASLRLTSTSYF 413
           CL TYL+N +T LN+    TASLR    S F
Sbjct: 289 CLQTYLINASTYLNE--VHTASLRKFILSAF 317


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3

Query: 505 CLTTYLLNGNTSLNKQCKETASLRLTSTSYF 413
           CL TYL+N +T LN+    TASLR    S F
Sbjct: 327 CLQTYLINASTYLNE--VHTASLRKFILSAF 355


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 820 LMQQFNNDTISHEMHFHNYFYEENCSQKYSFISLLM*LSVPI 695
           ++   +N TI H  + + Y Y  NC + Y  I+ +  + +P+
Sbjct: 81  IISSLSNKTI-HNNNNYKYNYNNNCKKLYYNINYIEQIPIPV 121


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = -3

Query: 838 KMIINLLMQQFNNDTISHEMHFHNYFYEENCSQKYSFISLLM*LSVPI 695
           K+I +L  +  +N+  +++ +++N  Y  NC + Y  I+ +  + VP+
Sbjct: 80  KIISSLSNRTIHNNN-NYKYNYNNNNYNNNCKKLYYNINYIEQIPVPV 126


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = -3

Query: 838 KMIINLLMQQFNNDTISHEMHFHNYFYEENCSQKYSFISLLM*LSVPI 695
           K+I +L  +  +N+  +++ +++N  Y  NC + Y  I+ +  + +P+
Sbjct: 80  KIISSLSNKTIHNNN-NYKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = -3

Query: 838 KMIINLLMQQFNNDTISHEMHFHNYFYEENCSQKYSFISLLM*LSVPI 695
           K+I +L  +  +N+  +++ +++N  Y  NC + Y  I+ +  + +P+
Sbjct: 80  KIISSLSNKTIHNNN-NYKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = -3

Query: 838 KMIINLLMQQFNNDTISHEMHFHNYFYEENCSQKYSFISLLM*LSVPI 695
           K+I +L  +  +N+  +++ +++N  Y  NC + Y  I+ +  + +P+
Sbjct: 80  KIISSLSNKTIHNNN-NYKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 166 YIIYNTAKFYNNISYNTHSQ 225
           Y  YN    YNN +YN +++
Sbjct: 324 YSNYNNYNNYNNNNYNNYNK 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,571
Number of Sequences: 438
Number of extensions: 5028
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)