Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o19
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   1.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    28   1.8  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   5.6  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   7.4  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    25   9.8  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 244 DSTLRETE*YLVEKEKRVRRTETARQREKIAKEK 345
           +  +RE E  + E+EKR+   E AR+ E   K+K
Sbjct: 264 EQRIREEEARIAEEEKRLAEVEEARKEEARLKKK 297


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 135 GFGNTNFT*IKKLILSRSCSDTILPLRTQDNNVIK 239
           GF + N    +KL L+ +C DTI+ L   DN  +K
Sbjct: 56  GFSSKNVKFEQKLDLAVTCLDTIVSLYAVDNEEVK 90


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 180 SRSCSDTILPLRTQDNNVIK*RFNIAGNRIIF 275
           S S S+T L ++T   N+++ R   +GN +IF
Sbjct: 821 STSISNTRLAIQTPTGNIVRLREERSGNGVIF 852


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 419 DINSKRSVRQI*SQTNEVNKLKGSHFSFAI 330
           DIN  R+ R   S+ N  N  +G H S+ +
Sbjct: 866 DINQVRAERSFSSRRNNGNSYRGGHQSYGV 895


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 241 RDSTLRETE*YLVEKEKRVRRTETARQREKI 333
           +DS   E    L ++EKRV R E  R   K+
Sbjct: 69  KDSNAEEQPAKLTKEEKRVEREEAKRMASKV 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,458
Number of Sequences: 5004
Number of extensions: 55828
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)