Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o19
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499...    31   1.5  
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016...    29   3.4  
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252...    29   4.4  
01_05_0701 - 24391404-24392261,24392385-24392867                       29   5.9  

>06_03_0730 -
           23948801-23949079,23949528-23949588,23949828-23949954,
           23950449-23950485,23950987-23951061,23951489-23951598,
           23952700-23952754,23952833-23952949,23953201-23953355,
           23953577-23953634,23954239-23954460
          Length = 431

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 278 LRKRNV*EGQRQQDRERKLQKRNVTPSTYLLHSFDFKFVS 397
           +RK  + E + QQ+ ++KLQKR+ TP   + H+   +FVS
Sbjct: 185 IRKWKLWETEIQQEMQQKLQKRDATPGR-IAHNQQGEFVS 223


>04_04_0503 -
           25701050-25701343,25701431-25701528,25701629-25701689,
           25701772-25701842,25701922-25702048,25702160-25702244,
           25702346-25702409,25702732-25702793,25703214-25703284,
           25703700-25703795,25703960-25704108,25704196-25704265,
           25704483-25704523,25704668-25704743
          Length = 454

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 302 GQRQQDRERKLQKRNVTPSTYLLHSFDFKFVSHFFY 409
           G ++Q  +R  +K+ +TP   L  S+  +FVS+F Y
Sbjct: 219 GTKKQKYDRISEKKMLTPVEVLCKSYPSEFVSYFHY 254


>10_08_0365 +
           17224777-17224852,17224949-17224989,17225175-17225244,
           17225338-17225486,17225940-17226035,17226481-17226551,
           17227077-17227138,17227311-17227374,17227463-17227547,
           17227631-17227757,17228241-17228374,17228808-17229122
          Length = 429

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 302 GQRQQDRERKLQKRNVTPSTYLLHSFDFKFVSHFFY 409
           G ++Q  +R  +K+ +TP+  L  S+  +F S+F Y
Sbjct: 219 GTKKQKYDRISEKKMLTPAEVLCKSYPSEFTSYFHY 254


>01_05_0701 - 24391404-24392261,24392385-24392867
          Length = 446

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 116 DIDYAVGFW*YQFYLN*EINIVSLMFRHHPSAPYTG 223
           ++DY  G   Y F LN ++NIV+ +    P AP  G
Sbjct: 387 EVDYGFGEPGYVFTLNDDVNIVASVIYLRPPAPKRG 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,842
Number of Sequences: 37544
Number of extensions: 297606
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)