Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o18
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   3.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   7.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 201 FIHFITIPINYSRISTTAGPLVIRKQHLKPLIPFKI 308
           ++H IT+P    RIS     L   +  +K   P ++
Sbjct: 131 YVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMEL 166


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 177 HMLIDQSEFIHFITIPINYSR 239
           H+  D S FI   T P  YS+
Sbjct: 180 HLFHDASNFIAMETFPSVYSK 200


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 18  FGVHMXSFVFCFVKLCEFFSV 80
           FG+++ SFV   + +  +++V
Sbjct: 120 FGLYLSSFVLVCISMDRYYAV 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,020
Number of Sequences: 438
Number of extensions: 1132
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)